Curriculum Vitae

Formació acadèmica

Biologia . Facultad CC. Biológicas, Univ. Valencia . 30/06/1982 . (Diplomatura / Llicenciatura / Grau)

Biologia . Facultad CC. Biológicas, Univ. Valencia . 23/12/1987 . (Doctorat )

Línies d'activitat

Epidemiología molecular de enfermedades infecciosas . Instituto Cavanilles de Biodiversidad y Biología Evolutiva . (01/01/2003)

Filogenómica y evolución de genomas bacterianos . Instituto Cavanilles de Biodiversidad y Biología Evolutiva . (01/01/2003)

Organització d'activitats de R+D

Responsable del Grupo de Investigación GIUV2013-098 "Evolución y Salud: Evolución experimental y epidemiología" de la Universidad de Valencia, constituido el 28 de noviembre de 2014 hasta la actualidad . Grupo de investigación oficial . 2014

Investigador responsable de la Unidad Mixta de Investigación "Infección y Salud Pública" FISABIO-Salud Pública / Universidad de Valencia - Instituto Cavanilles de Biodiversidad y Biología Evolutiva, según convenio vigente entre ambos organismos desde el 25 de junio de 2014 . Gestión unidad mixta de investigación . 2014

Participació en Comitès i Representacions

"Management Committee" del proyecto COST Action FA1101 "Omics Technologies for Crop Improvement, Traceability, Determination of Authenticity, Adulteration and Origin in Saffron" . (2014) . Técnologías ómicas para la mejora, trazabilidad, determinación de autenticidad, adulteración y origen del azafrán . 2011 - 2014

Comisión de Evaluación de Proyectos, programa BFU . Subprograma Biología Molecular y Celular . 2015

Comité Científico de la Fundación para el Fomento de la Investigación Sanitaria y Biomédica de la Comunidad Valenciana (FISABIO) . (31/08/2021) . Investigación Biomédica y Sanitaria . 25/01/2017 - 31/08/2021

Miembro experto de Fonds Wetenschappelijk Onderzoek (Fundación de Investigación de Flandes), Bélgica . (31/12/2018) . Biodiversidad y Ecología . 01/01/2017 - 31/12/2018

Instituto de Microbiología. Universidad San Francisco. Quito, Ecuador . Investigación interdisciplinar en el ámbito de la Microbiologóa . 05/07/2018

Scientific Chairperson del panel 3 (Biodiversidad y Ecología) de Fonds Wetenschappelijk Onderzoek (Fundación de Investigación de Flandes), Bélgica . (31/12/2022) . Biodiversidad y Ecología . 01/01/2019 - 31/12/2022

Miembro del Comité Asesor 3, Biología Celular y Molecular, de la Comisión Nacional Evaluadora de la Actividad Investigadora . (31/12/2019) . Evaluación actividad investigadora . 20/02/2019 - 31/12/2019

Comité Científico del Programa Valenciano de Investigación Vacunal COVID-19 . Asesoría Científica . 01/03/2021

Editor-in-Chief . Journal Infection Genetics and Evolution . 01/01/2022

Associate Editor . (31/12/2022) . Journal Scientific Reports . 01/01/2018 - 31/12/2022

Projectes

Red temática en genómica de la adaptación () . 2023 - 2025 . Ref.RED2022-134865-T . Ministerio de Ciencia e Innovación . IP: Carles VIla

Vigilancia genómica de SARS-CoV-2 en la Comunitat Valenciana. BOL00956-Estrategia Integral de Investigación en SARS-CoV2 y enfermedad COVID-19, Plan de Recuperación/Next Generation, Linea 13: Enfermedades Infecciosas y Epidemias Emergentes () . 2022 . Ref.20F01010202B_SANVAR12RVRA . Conselleria de Sanitat Universal i Salut Pública. Generalitat Valenciana. . IP: Fernando González Candelas

Genómica y evolución de bacterias resistentes a antibióticos: de la epidemiología molecular a la filogenómica () . 2022 - 2025 . Ref.PID2021-127010OB-I00 . Ministerio de Ciencia e Innovación . IP: Fernando González Candelas . (1 Investigadors)

Expanding the One Health approach to combat antimicrobial resistance () . 2022 - 2025 . Ref.CIPROM/2021/053 . Direcció General de Ciència i Investigació. Conselleria d'Innovació, Universitats, Ciència i Societat Digital. Generalitat Valenciana . IP: Fernando González Candelas . (7 Investigadors)

Investigación y desarrollo de un sistema para facilitar el estudio y análisis del genoma del COVID-19 a través de técnicas de secuenciación de nueva generación () . 2021 . Flomics Biotech S.L. . IP: Fernando González Candelas

Real time surveillance of SARS-CoV-2 S mutations () . 2021 - 2022 . CSIC . IP: Mireia Coscollá ; Santiago Elena

PREPARE - COVID-19 preparedness platform () . 2021 - 2022 . X . IP: Fernando González Candelas

"Identificación y cuantificación de contaminantes emergentes en aguas residuales (virus y fármacos) y posibles repercusiones en la calidad de las aguas () . 2021 - 2022 . General de Análisis, Materiales y Servicios, S.L. . IP: Fernando González Candelas

Evaluation of molecular point-of-care Xpert® Xpress SARS-CoV-2 detection implementation in resource limited settings () . 2021 - 2023 . Ref.EDCPT2 EXPERT-CoV2 . European & Developing Countries Clinical Trials Partnership, Research and Innovation Action (RIA) . IP: Daniel Minja

Addressing unknowns of COVID-19 transmission and infection combining pathogen genomics and epidemiology to inform public health interventions () . 2020 - 2021 . Ref.202020E085 . CSIC . IP: Iñaki Comas Espadas

Publicacions en revistes

Majander, Kerttu; Pla-Diaz, Marta; du Plessis, Louis; Arora, Natasha; Pezo Lanfranco, Luis; Eggers, Sabine; Filippini, Jose; González-Candelas, Fernando; Schuenemann, Verena J (2024). Redefining the treponemal history through pre-Columbian genomes from Brazil. Nature, 627, pp. 182 - 188 . https://doi.org/10.1038/s41586-023-06965-x . ISSN: 0028-0836

García-Marín, Ana María; Cancino-Muñoz, Irving; Torres-Puente, Manuela; Villamayor, Luis M; Borrás, Rafael; Borrás-Máñez, María; Bosque, Montserrat; Camarena, Juan J; Colomer-Roig, Ester; Colomina, Javier; Escribano, Isabel; Esparcia-Rodríguez, Óscar; Gil-Brusola, Ana; Gimeno, Concepcion; Gimeno-Gascón, Adelina; Gomila-Sard, Bárbara; Gónzales-Granda, Damiana; Gonzalo-Jiménez, Nieves; Guna-Serrano, María Remedios; López-Hontangas, José Luis; Martín-González, Coral; Moreno-Muñoz, Rosario; Navarro, David; Navarro, María; Orta, Nieves; Pérez, Elvira; Prat, Josep; Rodriguez, Juan Carlos; Ruiz-García, María Montserrat; Vanaclocha, Hermelinda; González-Candelas, Fernando; Furio, Victoria; Comas, Iñaki (2024). Role of the first WHO mutation catalogue in the diagnosis of antibiotic resistance in Mycobacterium tuberculosis in the Valencia Region, Spain: a retrospective genomic analysis. Lancet Microbe, 5(1), pp. e43 - e51 . https://doi.org/10.1016/S2666-5247(23)00252-5 . ISSN: 2666-5247

Álvarez-Herrera, Miguel; Sevilla, Jordi; Ruiz-Rodríguez, Paula; Vergara, Andrea; Vila, Jordi; Cano-Jiménez, Pablo; González-Candelas, Fernando; Comas, Iñaki; Coscolla, Mireia (2024). VIPERA: Viral Intra-Patient Evolution Reporting and Analysis. Virus Evolution, 10(1), p. veae018 . https://doi.org/10.1093/ve/veae018 . ISSN: 2057-1577

García-González, N.; Fuster, B.; Tormo, N.; Salvador, C.; Gimeno, C.; González-Candelas, F. (2023). Genomic analysis of the initial dissemination of carbapenem-resistant Klebsiella pneumoniae clones in a tertiary hospital. Microbial Genomics, 9(6), p. 001032 . https://doi.org/10.1099/mgen.0.001032 . ISSN: 2057-5858

Arnau, Vicente; Díaz-Villanueva, Wladimiro; Mifsut Benet, Jorge; Villasante, Paula; Beamud, Beatriz; Mompó, Paula; Sanjuan, Rafael; González-Candelas, Fernando; Domingo-Calap, Pilar; Dzunková, Mária (2023). Inference of the life cycle of environmental phages from genomic signature distances to their hosts. Viruses, 15(5), p. 1196 . Repositori Institucional . ISSN: 1999-4915

Camacho, Jorge; Giménez, Estela; Albert, Eliseo; Zulaica, Joao; Álvarez-Rodríguez, Beatriz; Torres, Ignacio; Rusu, Luciana; Burgos, Javier S.; Peiró, Salvador; Vanaclocha, Hermelinda; Limón, Ramón; Alcaraz, Maria Jesús; Sánchez-Payá, José; Díez-Domingo, Javier; Comas, Iñaki; González-Candelas, Fernando; Geller, Ron; Navarro, David (2023). Cumulative incidence of SARS-CoV-2 infection in the general population of the Valencian Community (Spain) after the surge of the Omicron BA.1 variant. Journal of Medical Virology, 95(1), p. e28284 . https://doi.org/10.1002/jmv.28284 . ISSN: 0146-6615

Beamud, Beatriz; García-González, Neris; Gómez-Ortega, Mar; González-Candelas, Fernando; Domingo-Calap, Pilar; Sanjuán, Rafael (2023). Genetic determinants of host tropism in Klebsiella phages. Cell Reports, 42(2), p. 112048 . https://doi.org/10.1016/j.celrep.2023.112048 . ISSN: 2211-1247

García-González, Neris; Beamud, Beatriz; Fuster, Begoña; Giner, Salvador; Domínguez, Mª Victoria; Sánchez, Antonia; Sevilla, Jordi; Coque, Teresa; Gimeno, Concepción; González-Candelas, Fernando (2023). Tracking the emergence and dissemination of a bla_NDM-23 gene in a multidrug resistance plasmid of K. pneumoniae. Microbiology Spectrum, 11(2), p. 2585-22 . https://doi.org/10.1128/spectrum.02585-22 . ISSN: 2165-0497

Vázquez-Morón, Sonia; Iglesias-Caballero, María; Lepe, José Antonio; Garcia, Federico; Melón, Santiago; Marimon, José M.; García de Viedma, Darío; Folgueira, Maria Dolores; Galán, Juan Carlos; López-Causapé, Carla; Benito-Ruesca, Rafael; Alcoba-Florez, Julia; Gonzalez Candelas, Fernando; Toro, María de; Fajardo, Miguel; Ezpeleta, Carmen; Lázaro, Fernando; Pérez Castro, Sonia; Cuesta, Isabel; Zaballos, Angel; Pozo, Francisco; Casas, Inmaculada; and members of the RELECOV network (2023). Enhancing SARS-CoV-2 surveillance through regular genomic sequencing in Spain: the RELECOV network. International Journal Of Molecular Sciences, 24(10), p. 8573 . https://doi.org/10.3390/ijms24108573 . ISSN: 1661-6596

Sánchez-Serrano, Andrea; Mejía, Lorena; Camaró, Maria Luisa; Ortolá-Malvar, Susana; Llácer-Luna, Martín; García-González, Neris; González-Candelas, Fernando (2023). Genomic surveillance of Salmonella from the Comunitat Valenciana (Spain. Antibiotics-Basel, 12(5), p. 883 . https://doi.org/10.3390/antibiotics12050883 . ISSN: 2079-6382

Tantaloa, Lauren C.; Liebermanb, Nicole A. P.; Pérez-Mañá, Clara; Vall Mayans, Marti; Ubalse, Maria; González-Beiras, Camila; Rodríguez-Gascón, Alicia; Canut, Andrés; González-Candelas, Fernando; Mueller, John; Greninger, Alexander L.; Giacani, Lorenzo; Mitjà, Oriol (2023). In vitro Antimicrobial Susceptibility of Treponema pallidum subsp. pallidum, the syphilis agent. Lancet Microbe, 4(12), pp. e0994 - e1004 . ISSN: 2666-5247

Saludes, Verónica; Bordoy, Antoni E.; Yela, Elena; Turú, Elisabet; Not, Anna; López-Corbeto, Evelin; Egea-Cortés, Laia; González-Candelas, Fernando; Casabona, Jordi; Group for the Study and Control of Infectious Diseases in Prison (GRUMIP); Marco, Andrés; Martró, Elisa (2023). Incidence and molecular epidemiology of hepatitis C virus reinfection in prisons in Catalonia, Spain (Re-HCV study). Scientific Reports, 13, p. 16012 . https://doi.org/10.1038/s41598-023-42701-1 . ISSN: 2045-2322

Mejía, Lorena; Espinosa-Mata, Estefanía; Freire, Ana Lucía; Zapata, Sonia; González-Candelas, Fernando (2023). Listeria monocytogenes, a silent foodborne pathogen in Ecuador. Frontiers In Microbiology, 14 . https://doi.org/10.3389/fmicb.2023.1278860 . ISSN: 1664-302X

Hufsky, Franziska; Abecasis, Ana; Babaian, Artem; Beck, Sebastian; Brierley, Liam; Dellicour, Simon; Eggeling, Christian; Elena, Santiago F.; Gieraths, Udo; Ha, Anh; Harvey, Will; Jones, Terry C.; Lamkiewicz, Kevin; Lencioni Lovate, Gabriel; Luecking, Dominik; Machyna, Martin; Nishimura, Luca; Nocke, Maximilian K.; Renard, Bernhard Y.; Sakaguchi, Shoichi; Sakellaridi, Lygeri; Spangenberg, Jannes; Tarradas-Alemany, Maria; Triebel, Sandra; Vakulenko, Yulia; Wijesekara, Yasas; González-Candelas, Fernando; Krautwurst, Sarah; Pérez-Cataluña, Alba; Randazzo, Walter; Sánchez, Gloria; Marz, Manja (2023). The International Virus Bioinformatics Meeting 2023. Viruses, 15(10), p. 2031 . https://doi.org/10.3390/v15102031 . ISSN: 1999-4915

Barberá-Riera, María; de Llanos, Rosa; Barneo-Muñoz, Manuela; Bijlsma, Lubertus; Celma, Alberto; Comas, Iñaki; Gomila, Bárbara; González-Candelas, Fernando; Goterris-Cerezuelo, Rafael; Martínez, Ferran; Santateresa, Ernesto; Torres-Puente, Manuela; Zamorano-López, Núria; Bretón-Ramos, Rafael; Aguilar-Pedriguer, Eduardo; Rebagliato, Marisa; Bellido-Blasco, Juan; Hernández, Félix (2023). Wastewater monitoring of a community Covid-19 outbreak in a Spanish municipality. Journal of Environmental Exposure Assessment, 2, p. 16 . https://doi.org/10.20517/jeea.2023.05 . ISSN: 2771-5949

Sánchez-Serrano, Andrea; García-González, Neris; Bonillo Jimenez, Daniel; Ruiz-Hueso, Paula; Vilanova, Rebeca; Campo, Israel; Tormo, Nuria; Salvador, Carme; Gimeno, Concepción; González-Candelas, Fernando (2022). Molecular Epidemiology of Methicillin-Resistant Staphylococcus aureus in a Tertiary Hospital from the Comunidad Valenciana (Spain). Microbial Drug Resistance, 28(12), pp. 1071 - 1078 . https://doi.org/10.1089/mdr.2022.0027 . ISSN: 1076-6294

Ignacio Torres; Estela Giménez; Eliseo Albert; Joao Zulaica; Beatriz Álvarez-Rodríguez; Javier S. Burgos; Salvador Peiró; Ramón Limón; Hermelinda Vanaclocha; Celia Rodado; Pilar Botija; Amelia Sifre; Borja Tur; Rosa Andrés Lozano; Iria Orosa; MªÁngeles Vicente-Ruiz; Ramón J. Carrión; Maria Á. Clari; José Sánchez-Payá; Javier Díez-Domingo; Iñaki Comas; Fernando González-Candelas; Ron Geller; David Navarro; the Valencian vaccine research program (ProVaVac) study group Comirnaty (2022). SARS-CoV-2 Omicron BA.1 variant breakthrough infections in nursing home residents after an homologous third dose of the Comirnaty® COVID-19 vaccine: Looking for correlates of protection. Journal of Medical Virology . ISSN: 0146-6615

Estela Gimenez; Eliseo Albert; Joao Zulaica; Ignacio Torres; Luciana Rusu; Alicia Rodriguez Moreno; Javier S. Burgos; Salvador Peiro; Dolores Salas; Hermelinda Vanaclocha; Ramon Limon; Maria Jesus Alcaraz; Jose  Sanchez-Pay; Javier Diez-Domingo4, Inaki Comas; Fernando Gonzales-Candelas; Ron Geller;David Navarro (2022). SARS-CoV-2 adaptive immunity in nursing home residents following a third dose of the Comirnaty® COVID-19 vaccine. Clinical Infectious Diseases . https://doi.org/10.1093/cid/ciac223 . ISSN: 1058-4838

Albert E; Burgos JS; Peiró S; Salas D; Vanaclocha H; Giménez E; Limón R; Alcaraz MJ; Sánchez-Payá J; Díez-Domingo J; Navarro D; Valencian Vaccine Research Programme (ProVaVac) Study Group.(Burgos, J.S.; Meneu de Guillerna, R.; Vanaclocha Luna, H.; Burks, D.J.; Comas, I.; Díez-Domingo, J.; Peiro, S.; González-Candelas, F.; Ferrer Albiach, C.; Hernández-Aguado, I.; Oliver Ramírez, N.; Sánchez-Payá, J.; Vento Torres, M.; Zapater Latorre, E.; Navarro, D.) (2022). Immunological response against SARS-CoV-2 following full-dose administration of Comirnaty® COVID-19 vaccine in nursing home residents. Clinical Microbiology and Infection, 28(2), pp. 279 - 284 . https://doi.org/10.1016/j.cmi.2021.09.031 . ISSN: 1198-743X

Rodríguez-Grande, C.; Alcalá, L.; Estévez, A.; Sola-Campoy, P.J.; Buenestado-Serrano, S.; Martínez-Laperche, C.; Manuel de la Cueva, V.; Alonso, R.; Andrés-Zayas, C.a; Adán-Jiménez, J.; Losada, C.; Rico-Luna, C.; Comas, I.; González-Candelas, F.; Catalán, P.; Muñoz, P.; Pérez-Lago, L.; García de Viedma, D.; on behalf of the Gregorio Marañón Microbiology-ID COVID 19 Study Group. (2022). Systematic genomic and clinical analysis of SARS-CoV-2 reinfections and recurrences involving the same strain. Emerging Infectious Diseases, 28(1), pp. 85 - 94 . https://doi.org/10.3201/eid2801.211952 . ISSN: 1080-6040

Pla-Díaz, M.; Sánchez-Busó, L.; Giacani, L.; ¿majs, D.; Bosshard, P.P.; Bagheri, H.C.; Schuenemann, V. J.; Nieselt, K.; Arora, N.; González-Candelas, F. (2022). Evolutionary processes in the emergence and recent spread of the syphilis agent, Treponema pallidum. Molecular Biology and Evolution, 39(1), p. msab318 . ISSN: 0737-4038

Costa, Rosa; Olea, Beatriz; Bracho, María Alma; Albert, Eliseo; de Michelena, Paula; Martínez-Costa, Cecilia; González-Candelas, Fernando; Navarro, David (2022). RNA viral loads of SARS-CoV-2 Alpha and Delta variants in nasopharyngeal specimens at diagnosis stratified by age, clinical presentation and vaccination status. Journal of Infection, 84(4), pp. 582 - 584 . ISSN: 0163-4453

Lopez-Causape, Carla; Fraile-Ribot, Pablo A.; Jiménez-Serrano, Santiago; Cabot, Gabriel; del Barrio-Tofiño, Ester; Prado, Maria Carmen; Linares, Juana Maria; López, Aranzazu; Hurtado, Adoración; Riera, Elena; Serra, Antoni; Roselló, Eva; Carbó, Lluis; Fernández-Baca, Maria Victoria; Gallegos, Carmen; Saurina, Juan; Arteaga, Emilio; Salom, Maria Magdalena; Salvá, Antonia; Nicolau, Antoni; Gonzalez-Candelas, Fernando; Comas, Iñaki; Oliver, Antonio (2022). A genomic snapshot of the SARS-CoV-2 pandemic in the Balearic Islands. Frontiers In Microbiology, 12, p. 803827 . https://doi.org/10.3389/fmicb.2021.803827 . ISSN: 1664-302X

Francés-Cuesta, Carlos; Ansari, Iván; Fernández-Garayzábal, José Francisco, Gibello, Alicia; González-Candelas, Fernando (2022). Comparative genomics and evolutionary analysis of Lactococcus garvieae isolated from human endocarditis. Microbial Genomics, 8, p. 771 . ISSN: 2057-5858

de Michelena, Paula; Torres, Ignacio; Albert, Eliseo; Bracho, Alma; González-Candelas, Fernando; Navarro, David (2022). Impact of time elapsed since full vaccination on SARS-CoV-2 RNA load in Delta-variant breakthrough COVID-19s. Journal of Infection, 84(4), pp. 579 - 613 . https://doi.org/10.1016/j.jinf.2022.01.006 . ISSN: 0163-4453

Torres, Ignacio; Bellido-Blasco, Juan B.; Gimeno, Concepción; Burgos, Javier S.; Albert, Eliseo; Moya-Malo, Raúl; Gascó-Laborda, Juan Carlos; Tornero, Ana; Soriano, Josefa; Meseguer-Ferrer, Noemí; Martínez-Serrano, María; Ortíz-Rambla, Javier; Buj, Helena; Hernández, Noelia; Peiró, Salvador; Salas, Dolores; Limón, Ramón; Vanaclocha, Hermelinda; Sánchez-Payá, José; Díez-Domingo, Javier; Comas, Iñaki; González-Candelas, Fernando; Navarro, David. (2022). SARS-CoV-2 Delta-variant breakthrough infections in nursing home residents at mid-term after Comirnaty® COVID-19 vaccination. Journal of Medical Virology, 94(8), pp. 3776 - 3782 . https://doi.org/10.1002/jmv.27799 . ISSN: 0146-6615

hufsky, Franziska; Beslic, Denis; Boeckaerts, Dimitri; Duchene, Sebastian; Gonzalez-Tortuero, Enrique; Gruber, Andreas; Guo, Jiarong; Jansen, Daan; Juma, John; Kongkitimano, Kunaphas; Luque, Antoni; Ritsch, Muriel; Lenconi Lovate, Gabriel; Nishimura, Luca; Pas, Célia; Domingo, Esteban; Hodcroft, Emma; Lemey, Philippe; Sullivan, Matthew B.; Weber, Friedemann; González-Candelas, Fernando; Krautwurst, Sarah; Pérez-Cataluña, Alba; Randazzo, Walter; Sánchez Moragas, Gloria; Marz, Manja (2022). The International Virus Bioinformatics Meeting 2022. Viruses, 14(5), p. 973 . https://doi.org/10.3390/v14050973 . ISSN: 1999-4915

Mejía, Lorena; Prado, Belén; Cárdenas, Paúl; Trueba, Gabriel; González-Candelas, Fernando (2022). The impact of genetic recombination on pathogenic Leptospira. Infection Genetics And Evolution, 102, p. 105313 . https://doi.org/10.1016/j.meegid.2022.105313 . ISSN: 1567-1348

de Michelena, Paula; Olea, Beatriz; Torres, Ignacio; González-Candelas, Fernando; Navarro, David (2022). SARS-CoV-2 RNA load in nasopharyngeal specimens from outpatients with breakthrough COVID-19 due to Omicron BA.1 and BA.2. Journal of Medical Virology, 94(12), pp. 5836 - 5840 . https://doi.org/10.1002/jmv.28079 . ISSN: 0146-6615

de Michelena, Paula; Torres, Ignacio; -Cuevas Ferrando, Enric; González-Candelas, Fernando; Sánchez, Gloria; Navarro, David (2022). SARS-CoV-2 RNA and infectious viral loads in vaccine-breakthrough COVID-19 due to the Delta and Omicron variants. Clinical Microbiology and Infection, 29(2), pp. 256.e1 - 256.e4 . ISSN: 1198-743X

Bordoy, Antoni; Vallès, Xavier; Not, Anna; Chiner-Oms, Alvaro; Saludes, Verónica; Torres Cervós, Judit; Roset Roig, Anna; Juan-Andrés, Concha; Sureda, Helena; Pardo-Amil, Vanessa; García, Irene; Guitart Rossell, Gemma; Cambra Cibeira, Laura; Casañ, Cristina; Giménez, Montserrat; Blanco, Ignacio; Torres-Puente, Manuela; Cancino-Muñoz, Irving; González-Candelas, Fernando; Comas, Iñaki, Martró, Elisa (2022). Epidemiological and genomic analysis of a large SARS-CoV-2 outbreak in a long-term care facility in Catalonia, Spain. Msphere, 7(6), p. 346 . https://doi.org/10.1128/msphere.00346-22 . ISSN: 2379-5042

Ruiz-Rodríguez, Paula; Frances-Gomez, Clara; Chiner-Oms, Álvaro; López, Mariana G.; Jiménez Serrano, Santiago; Cancino-Muñoz, Irving; Ruiz-Hueso, Paula; Torres-Puente, Manuela; Bracho, Maria Alma; D'Auria, Giuseppe; Martinez-Priego, Llúcia; Guerreiro, Manuel; Montero-Alonso, Marta; Gómez, María Dolores; Piñana, José Luis; SeqCOVID-SPAIN consortium; González-Candelas, Fernando; Comas, Iñaki; Marina, Alberto; Geller, Ron; Coscolla, Mireia (2021). Evolutionary and phenotypic characterization of two spike mutations in European Lineage 20E of SARS-CoV-2. MBio, 12(6), pp. e2315 - e2321 . https://doi.org/10.1128/mBio.02315-21 . ISSN: 2161-2129

Pérez Lago, L.; Aldamiz Echevarria, T.; Garcia Martinez, R.; Pérez Latorre, L.; Herranz, M.; Sola Campoy, P.; Suarez Gonzalez, J.; Martinez Laperche, C.; Comas, I.; Gonzalez Candelas, F.; Catalán, P.; Muñoz, P.; Garcia de Viedma, D. (2021). Different within-host viral evolution dynamics in three severely immunosuppressed cases with persistent SARS-CoV-2. Biomedicines, 9(7), p. 808 . https://doi.org/10.3390/biomedicines9070808 . ISSN: 2227-9059

Hodcroft, Emma B.; Zuber, Monica; Nadeau, Sarah; Crawford, Katharine H.D.; Bloom, Jesse D.; Veesler, David; Vaughan, Timothy G.; Comas, Iñaki; González-Candelas, Fernando; SeqCOVID-Spain consortium; Stadler, Tanja; Neher, Richard A (2021). Emergence and spread of a SARS-CoV-2 variant through Europe in the summer of 2020. Nature, 595, pp. 707 - 712 . https://doi.org/10.1038/s41586-021-03677-y . ISSN: 0028-0836

Francés-Cuesta, C.; Sánchez-Hellín, V.; Gomila, B.; González-Candelas, F. (2021). Is there a widespread clone of Serratia marcescens causing outbreaks worldwide?. Journal of Hospital Infection, 108, pp. 7 - 14 . https://doi.org/10.1016/j.jhin.2020.10.029 . ISSN: 0195-6701

Valiente-Mullor, C.; Beamud, B.; Ansari, I.; Francés-Cuesta, C.; García-González, N.; Mejía, L.; Ruiz-Hueso, P.; González-Candelas, F. (2021). One is not enough: on the effects of reference genome for the mapping and subsequent analyses of short-reads. Plos Computational Biology, 17(1), p. e1008678 . https://doi.org/10.1371/journal.pcbi.1008678 . ISSN: 1553-734X

Van Rie, A.; García de Viedma, D.; Meehan, C.; Comas, I.; Heupink, T.H.; De Vos, E.; Arrazola de Oñate, W.; Mathys, V.; Ceyssens, P.-J.; Groenen, G.; González-Candelas, F.; Forier, A.; Juengst, E. (2021). Realtime whole genome sequencing for TB source investigation: principles for ethical precision public health. International Journal of Tuberculosis and Lung Disease . ISSN: 1027-3719

Guardiola-Avila, I.; Sánchez-Busó, L.; Acedo-Félix, E.; Zúñiga-Cabrera, M.; Gomez-Gil, B.; González-Candelas, F.; Noriega-Orozco, L. (2021). Core and accessory genome analysis of Vibrio mimicus. Microorganisms, 9(1), p. 191 . https://doi.org/10.3390/microorganisms9010191 . ISSN: 2076-2607

López, Mariana G.; Chiner-Oms, Álvaro; García de Viedma, Darío; Ruiz-Rodriguez, Paula; Bracho, Maria Alma; Cancino-Muñoz, Irving; D'Auria, Giuseppe; de Marco, Griselda; González-Candelas*, Fernando; Comas*, Iñaki; et al. (2021). The first wave of the COVID-19 epidemic in Spain was associated with early introductions and fast spread of a dominating genetic variant. Nature Genetics, 153, pp. 1405 - 1404 . https://doi.org/10.1038/s41588-021-00936-6 . ISSN: 1061-4036

González-Candelas, F.; Shaw, M.-A.; Phan, T.; Kulkarni-Kale, U.; Paraskevis, D.; Luciani, F.; Kimura, H.; Sironi, M. (2021). One year into the pandemic: short-term evolution of SARS-CoV-2 and emergence of new lineages. Infection Genetics And Evolution, 92, p. 104869 . ISSN: 1567-1348

Pérez-Lago, Laura; Sola Campoy, Pedro J.; Buenestado-Serrano, Sergio; Catalán, Pilar; Estévez, Agustín; de la Cueva, Víctor Manuel; Herranz, Marta; Suárez-González, Julia; Alcalá, Luis; Comas, Iñaki; González Candelas, Fernando; Muñoz, Patricia; García de Viedma, Darío; on behalf of Gregorio Marañón Microbiology-ID COVID-19 Study Group (2021). Epidemiological and genomic snapshot of the first 100 B.1.1.7 SARS-CoV-2 cases in Madrid. Journal of Travel Medicine, 28(4), p. taab044 . ISSN: 1195-1982

Carmona-Salido, H.; Fouz, B.; Sanjuán, E.; Carda Diéguez, M.; Delannoy, C.; García-González, N.; González-Candelas, F.; Amaro, C. (2021). Draft genomes sequences of Vibrio vulnificus recovered from moribund tilapia (Oreochromis niloticus). Microbiology Resource Announcements, 10(22), p. e0009421 . https://doi.org/10.1128/MRA.00094-21 . ISSN: 2576-098X

Pérez Lago, L.; Martínez Lozano, H.; Pajares Díaz, J.A.; Díaz Gómez, A.; Machado, M.; Sola Campoy, P.; Herranz, M.; Valerio, Maricela; O., María; Andrés Zayas, C.; Comas, I.; González Candelas, F.; Bañares, R.; Catalán, P.; Muñoz, P.; García de Viedma, D. (2021). Proper assignation of reactivation in a COVID-19 recurrence initially interpreted as reinfection. Journal of Infectious Diseases, 224(5), pp. 788 - 792 . https://doi.org/10.1093/infdis/jiab302 . ISSN: 0022-1899

Pérez Lago, L.; Martínez Lozano, H.; Pajares Díaz, J.A.; Díaz Gómez, A.; Machado, M.; Sola Campoy, P.; Herranz, M.; Valerio, M.; Olmedo, M.; Andrés Zayas, C.; Quesada Cubo, V.; Gómez Ruiz, M.M.; López Fresneda, N.; Sánchez Arcilla, I.; Comas, I.; González Candelas, F.; García de San José, S.; Bañares, R.; Catalán, P.; Muñoz, P.; García de Viedma, D. (2021). Overlapping of independent SARS-CoV-2 nosocomial transmissions in a complex outbreak. Msphere, 6(4), p. 389 . ISSN: 2379-5042

Alatorre-García, T.A.; Fonseca-Coronado, S.; González-Candelas, F. (2021). Homologous recombination as a mechanism of genetic changes in bovine parainfluenza-3 virus. Veterinary Microbiology, 261, p. 10 . https://doi.org/10.1016/j.vetmic.2021.109185 . ISSN: 0378-1135

Pérez Lago, L.; Pérez Latorre, L.; Herranz, Marta; Tejerina, F.; Sola-Campoy, P. J.; Sicilia, J.; Suárez-González, J.; Andrés-Zayas, C.; Chiner-Oms, A.; Jiménez-Serrano, S.; García-González, N.; Comas, I.; González Candelas, F.; Martínez-Laperche, C.; Catalán, P.; Muñoz, P.; García de Viedma, D. (2021). A complete analysis of the epidemiological scenario around a SARS-CoV-2 reinfection: previous infection events and subsequent transmission. Msphere, 6, p. e00596-21 . https://doi.org/10.1128/mSphere.00596-21 . ISSN: 2379-5042

Costa, R.; Bueno, F.; Giménez, E.; Bracho, M.A.; Albert, E.; Carretero, D.; Michelena, P.; Martínez-Costa, C.; González-Candelas, F.: Navarro, D. (2021). Initial viral load and decay kinetics of SARS-CoV-2 lineage B.1.1.7 in the upper respiratory tract of adults and children. Journal of Infection, 83(4), pp. 515 - 518 . https://doi.org/10.1016/j.jinf.2021.08.015 . ISSN: 0163-4453

González-Candelas,F. (2021). Mutaciones, variantes y linajes del SARS-CoV-2. Virología, 24, pp. 49 - 56 . ISSN: 1133-0384

González-Candelas,F. (2021). Genética y evolución en la pandemia de COVID-19. AmbioCiencias: Revista de Divulgación Científica e Innovación Docente, 19, pp. 63 - 72 . ISSN: 2174-8942

Carmona-Salido, Hector; Fouz, Belen; Sanjuán, Eva; Carda Diéguez, Miguel; Delannoy, Christian; García-González, Neris; González-Candelas, Fernando; Amaro, Carmen (2021). The widespread presence of a family of fish virulence plasmids in Vibrio vulnificus stresses its relevance as a zoonotic pathogen linked to fish farms. Emerging Microbes & Infections, 10(1), pp. 2128 - 2140 . https://doi.org/10.1080/22221751.2021.1999177 . ISSN: 2222-1751

Giménez, Estela; Albert, Eliseo; Zulaica, Joao; Torres, Ignacio; Rusu, Luciana; Moreno, Alicia Rodríguez; Burgos, Javier S; Peiró, Salvador; Salas, Dolores; Vanaclocha, Hermelinda; Limón, Ramón; Alcaraz, María Jesús; Sánchez-Payá, José; Díez-Domingo, Javier; Comas, Iñaki; González-Candelas, Fernando; Geller, Ron; Navarro, David; {Valencian Vaccine Research Program (ProVaVac) Study Group (2021). Severe Acute Respiratory Syndrome Coronavirus 2 Adaptive Immunity in Nursing Home Residents Following a Third Dose of the Comirnaty Coronavirus Disease 2019 Vaccine. Clinical Infectious Diseases, 75(1), pp. e865 - e868 . https://doi.org/10.1093/cid/ciac223 . ISSN: 1058-4838

Alm, Erik; Broberg, Eeva K.; Connor, Thomas; Hodcroft, Emma; Komissarov, Andrey B.; Maurer-Stroh, Sebastian; Melidou, Angeliki; Neher, Richard; O'Toole, Áine; Pereyaslov, Dmitriy; Niko Beerenwinkel, Susana Posada-Céspedes, Kim Philipp; Jablonski, Pedro Falé Ferreira, Ivan Topolsky, ..., Norbert Nowotny, Osama Abdul-Wahab, Fernando Gonzalez- Candelas, Martin H Andersen, Sarah Taylor (2020). Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020. Eurosurveillance, 25(32), pp. 1 - 8 . Repositori Institucional . ISSN: 1560-7917

Comas,I.; Cancino-Muñoz,I.; Mariner-Llicer,C.; Goig,G.A.; Ruiz-Hueso,P.; Francés-Cuesta,C.; García-González,N.; González-Candelas,F. (2020). Uso de las tecnologías de secuenciación masiva para el diagnóstico y epidemiología de enfermedades infecciosas. Enfermedades Infecciosas y Microbiología Clínica, 38(Suppl. 1), pp. 32 - 38 . ISSN: 0213-005X

Pérez-Losada,M.; Arenas,M.; Galán,J.C.; Bracho,M.A; Hillung,J.; García-González,N.; González-Candelas,F. (2020). High-Throughput Sequencing (HTS) for the analysis of viral populations. Infection Genetics And Evolution, 80, p. 1042088 . https://doi.org/10.1016/j.meegid.2020.104208 . ISSN: 1567-1348

Sironi, M.; Hasnain, S.E.; Phan, T.; Luciani, F.; Shaw, M.-A.; Sallum, M.A.; Ezzaty Mirhashemi, M.; Morand, S.; González-Candelas, F. (2020). SARS-CoV-2 and COVID-19: A Genetic, Epidemiological, and Evolutionary Perspective. Infection Genetics And Evolution, 84, p. 104384 . https://doi.org/10.1016/j.meegid.2020.104384 . ISSN: 1567-1348

Beale, M.A.; Noguera-Julian, M.; Godornes, C.; Casadellà, M.; González-Beiras, C.; Parera, M.; Corbacho-Monne, M.; Paredes, R.; Gonzalez-Candelas, F.; Marks, M.; Lukehart, S.; Thomson, N.R.; Mitjà, O. (2020). Yaws re-emergence and bacterial drug resistance selection after mass administration of azithromycin: a genomic epidemiology investigation. Lancet Infectious Diseases, 1(6), pp. e263 - e271 . https://doi.org/10.1016/S2666-5247(20)30113-0 . ISSN: 1473-3099

Fuster, B.; Salvador, C.; Tormo, N.; García-González, N.; González-Candelas, F.; Gimeno, C. (2020). Molecular epidemiology and drug-resistance mechanisms in carbapenem-resistant Klebsiella pneumoniae isolated in patients from a tertiary hospital in Valencia, Spain. Journal Of Global Antimicrobial Resistance, 22, pp. 718 - 725 . https://doi.org/10.1016/j.jgar.2020.05.002 . ISSN: 2213-7165

Majander, K.; Pfrengle, S.; Neukamm, J.; Kocher, A.; du Plessis, L.; Pla-Díaz, M.; Arora, N.; Akgül, G.; Salo, K.; Schats, R.; Inskip, S.; Oinonen, M.; Valk, H.; Malve, M.; Kriiska, A.; Onkamo, P.; González-Candelas, F.; Kühnert, D.; Krause, J.; Schuenemann, V.J. (2020). Ancient bacterial genomes reveal a formerly unknown diversity of Treponema pallidum strains in the early modern Europe. Current Biology, 30, pp. 1 - 16 . https://doi.org/10.1016/j.cub.2020.07.058 . ISSN: 0960-9822

Mejía, L.; Medina, J.L.; Bayas, R.; Villavicencio, F.; Zapata, S.; Matheu, J.; Wagenaar, J.A; González-Candelas, F.; Vinueza-Burgos, C. (2020). Genomic epidemiology of Salmonella Infantis in Ecuador: from poultry farms to human infections. Frontiers In Veterinary Science, 7, p. 691 . https://doi.org/10.3389/fvets.2020.547891 . ISSN: 2297-1769

Albert, E.; Bracho, M.A.; Serrano, A.; González-Candelas, F.; Navarro, D. (2020). Assessing the potential association between SARS-CoV-2 RNA load in the respiratory tract and COVID-19 mortality. Journal of Medical Virology . https://doi.org/10.1002/jmv.26644 . ISSN: 0146-6615

Carazo, P.; González-Candelas, F. (2020). COVID19: los sexos y evolución, a la defensiva. Mètode - Revista de la Universitat de València, 106, pp. 88 - 89 . ISSN: 1133-3987

Domingo-Calap, Pilar; Beamud, Beatriz; Vienne, Justine; González-Candelas, Fernando; Sanjuán, Rafael (2020). Isolation of four lytic phages infecting Klebsiella pneumoniae K22 clinical isolates from Spain. International Journal Of Molecular Sciences, 21(2), p. 425 . https://doi.org/10.3390/ijms21020425 . ISSN: 1661-6596

Domingo-Calap, Pilar; Beamud, Beatriz; Mora,L.; González-Candelas, Fernando; Sanjuán, Rafael (2020). Isolation and characterization of two Klebsiella pneumoniae phages encoding divergent depolymerases. International Journal Of Molecular Sciences, 21(9), p. 3160 . ISSN: 1661-6596

González-Candelas, F. (2020). La evolución, herramienta básica para estudiar los virus SARS-CoV-2. eVOLUCIÓN. Revista de la Sociedad Española de Biología Evolutiva., 14(11), pp. 17 - 34

Barragán-Praga,H.; Ruiz-Hueso,P.; Tedim,A.P.; González-Candelas,F.; Galán,J.C.; Cantón,R.; Morosini,M.I. (2019). Emergence and dissemination of colistin-resistant Klebsiella pneumoniae isolates expressing OXA-48 plus CTX-M-15 in patients not previously treated with colistin in a Spanish University hospital. Infection Genetics And Evolution, 93, pp. 147 - 153 . ISSN: 1567-1348

Beamud, Beatriz; Bracho, María Alma; Gonzalez-Candelas, Fernando. (2019). Characterization of new recombinant forms of HIV-1 from the Comunidad Valenciana (Spain) by phylogenetic incongruence. Frontiers In Microbiology, 10, p. 01006 . https://doi.org/10.3389/fmicb.2019.01006 . ISSN: 1664-302X

León-Sampedro, Ricardo; del Campo, Rosa; Rodríguez-Baños, Mercedes; Lanza, Val; Pozuelo, María José; Francés-Cuesta, Carlos; Tedim, Ana P.; Freitas, Ana; Novais, Carla; Peixe, Luísa; Willems, Rob; Corander, Jukka; González-Candelas, Fernando; Baquero, Fernando; Coque, Teresa (2019). Phylogenomics of Enterococcus faecalis from wild birds: New insights into host-associated differences in core and accessory genomes of the species. Environmental Microbiology, 21(8), pp. 3046 - 3062 . https://doi.org/10.1111/1462-2920.14702 . ISSN: 1462-2912

Chiner-Oms, Alvaro; Berney, Michael; Boinett, Christine; Gonzalez-Candelas, Fernando; Young, Douglas; Gagneux, Sebastien; Jacobs, William; Parkhill, Julian; Cortes, Teresa; Comas, Iñaki (2019). Genome-wide mutational biases fuel transcriptional diversity in the Mycobacterium tuberculosis complex. Nature Communications, 10(1), p. 3994 . https://doi.org/10.1038/s41467-019-11948-6 . ISSN: 2041-1723

Francés-Cuesta, Carlos; de la Caba, Idoia; Idigoras, Pedro; Fernández-Rodríguez, Amparo; del Valle Pérez, David; Marimón, Jose MarÍa; González-Candelas, Fernando (2019). Whole-genome sequencing of Neisseria gonorrhoeae in a forensic transmission case. Forensic Science International-Genetics, 42, pp. 141 - 146 . ISSN: 1872-4973

Chiner-Oms, Álvaro; Sánchez-Busó, Leonor; Corander, Jukka; Gagneux, Sebastien; Harris, Simon; Young, Douglas; González-Candelas, Fernando; Comas, Iñaki (2019). Genomic determinants of sympatric speciation of the Mycobacterium tuberculosis complex across evolutionary timescales. Science Advances, 5(6), p. eaaw2207 . https://doi.org/10.1126/sciadv.aaw3307 . ISSN: 2375-2548

Francés-Cuesta, Carlos; de la Caba, Idoia; Idigoras, Pedro; Fernández-Rodríguez, Amparo; del Valle Pérez, David; Marimón, Jose MarÍa; González-Candelas, Fernando (2019). Molecular evolution and complete genome sequences in forensic analysis: Neisseria gonorrhoeae in a transmission case. Forensic Science International-Genetics, 7, p. 432 . https://doi.org/10.1016/j.fsigss.2019.10.040 . ISSN: 1872-4973

González-Candelas,F.; Francés-Cuesta,C.; García-González,N. (2019). The power and limitations of genomic surveillance of bacteria. Future Microbiology, 14(16), p. 0259 . https://doi.org/10.2217/fmb-2019-0259 . ISSN: 1746-0913

Gambato, Martina; Gregori, Josep; Quer, Josep; Koutsoudakis, George; González, Patricia; Caro-Pérez, Noelia; García-Cehic, Damir; García-González, Neris; González-Candelas, Fernando; Esteban, Juan I.; Crespo, Gonzalo; Navasa, Miquel; Forns, Xavier; Pérez-del-Pulgar, Sofía (2019). Hepatitis C virus intrinsic molecular determinants may contribute to the development of cholestatic hepatitis after transplantation. Journal of General Virology, 100, pp. 63 - 68 . https://doi.org/10.1099/jgv.0.001175 . ISSN: 0022-1317

Domingo-Calap,P.; Schubert,B.; Joly,M.; Solis,M.; Untrau,M.; Muller,C.; Le Gentil,M.; Michel,S.; Carapito,R.; Georgel,P.; Caillard,S.; Fafi-Kremer,S.; Kohlbacher,O.; Paul,N.; González-Candelas,F.; Bahram,S. (2018). An unusually high substitution rate for transplant-associated BK polyomavirus in vivo is further concentrated in HLA-C-bound viral peptides. PLOS Pathogens, 14(10), p. e1007368 . Publicacion online (https://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1007368) . ISSN: 1553-7366

Álvaro Chiner-Oms; Fernando González-Candelas, Iñaki Comas (2018). Gene expression models based on a reference laboratory strain are poor predictors of Mycobacterium tuberculosis complex transcriptional diversity. Scientific Reports, 8, p. 3813 . https://doi.org/10.1038/s41598-018-22237-5 . ISSN: 2045-2322

Strouhal,M.; Oppelt,J.; Mikalová,L.; Arora,N.; Nieselt,K.; González-Candelas,F.; Smajs,D. (2018). Reanalysis of Chinese Treponema pallidum samples: all Chinese samples cluster with SS14-like group of syphilis-causing treponemes. BMC Research Notes, 16, p. 11 . https://doi.org/10.1186/s13104-017-3106-7 . ISSN: 1756-0500

Patiño-Galindo, J.A.; González-Candelas, F., Pybus, O. (2018). The effect of RNA substitution models on viroid and RNA virus phylogenies. Genome Biology And Evolution, 10(2), pp. 657 - 666 . https://doi.org/10.1093/gbe/evx273 . ISSN: 1759-6653

Roig,F.J; González-Candelas,F.; Sanjuán,E.; Feil,E.J.; Fouz,B.; Llorens,C.; Baker-Austin,C.; Oliver,J.D.; Danin-Poleg,Y.; Gibas,C.J.; Kashi,Y.; Gulig,P.A.; Morrison,S.S.; Amaro,C. (2018). Phylogeny of Vibrio vulnificus from the analysis of the core-genome: implications for intra-species taxonomy. Frontiers In Microbiology, 8, p. 2613 . Repositori Institucional . ISSN: 1664-302X

Ramírez Soto,M.C.; Bracho,M.A.; González-Candelas,F.; Huichi-Atamaric,M. (2018). Genotypes and subgenotypes of hepatitis B virus circulating in an endemic area in Peru. Archives of Virology, 163(1), pp. 183 - 189 . https://doi.org/10.1007/s00705-017-3557-0 . ISSN: 0304-8608

Patiño-Galindo, Juan; González-Candelas, Fernando (2018). Molecular evolution methods to study HIV-1 epidemics. Future Virology, 13(6), pp. 399 - 404 . ISSN: 1746-0794

Grillová, Linda; Bawa, Tanika; Mikalová, Lenka; Gayet-Ageron, Angèle; Nieselt, Kay; Strouhal, Michal; Sednaoui, Patrice; Ferry, Tristan; Cavassini, Matthias; Lautenschlager, Stephan; Dutly, Fabrizio; Plá-Díaz, Marta; Krützen, Michael; González-Candelas, Fernando; Bagheri, Homayoun; ¿majs, David; Arora, Natasha; Bosshard, Philipp P. (2018). Molecular characterization of Treponema pallidum subsp. pallidum in Switzerland and France with a new Multilocus Sequence Typing scheme. Plos One, 13(7), p. e0200773 . ISSN: 1932-6203

González-Candelas, Fernando; Bracho, Mª Alma; Hillung, Julia; Chiner, Alvaro; Ruiz-Hueso, Paula; Francés-Cuesta, Carlos; Mejía, Mª Lorena; Beamud, Beatriz; Pla-Díaz, Marta; García-González, Neris (2018). Epidemiología molecular de microorganismos patógenos: entre la evolución y la clínica. SEM@foro (Madrid), 65, pp. 31 - 32 . ISSN: 2254-4399

Patiño-Galindo,J.A.; Domínguez,F.; Cuevas,M.; Delgado,E.; Sánchez,M.; Pérez-Álvarez,L.; Thomson,M.M.; Sanjuán,R.; González-Candelas,F.; Cuevas,.J.M. (2018). Genome-scale analysis of evolutionary rate and selection in a fast-expanding Spanish cluster of HIV-1 subtype F. Infection Genetics And Evolution, 66, pp. 43 - 47 . Repositori Institucional . ISSN: 1567-1348

Perpiñán,E.; Caro-Pérez,N.; García-González,N.; Gregori,J.; González,P.; Bartres,C.; Soria,M.E.; Perales,C.; Lens,S.; Mariño,Z.; Londoño,M.C.; Ariza,X.; Koutsoudakis,G.; Quer,J.; González-Candelas,F.; Forns,X.; Pérez-del-Pulgar,S. (2018). Hepatitis C virus early kinetics and resistance-associated substitution dynamics during antiviral therapy with direct-acting antivirals. Journal of Viral Hepatitis, 25(12), pp. 1515 - 1525 . https://doi.org/10.1111/jvh.12986 . ISSN: 1352-0504

Patiño-Galindo,J.A.; González-Candelas,F. (2017). The substitution rate of HIV-1 subtypes: a genomic approach. Virus Evolution, 3(2), p. vex029 . Repositori Institucional . ISSN: 2057-1577

Patiño-Galindo, JÁ; Torres-Puente, M; Bracho, MA; Alastrué, I; Juan, A; Navarro, D; Galindo, MJ; Ocete, D; Ortega, E; Gimeno, C; Belda, J; Dominguez, V; Moreno, R; Gonzalez-Candelas, F (2017). The molecular epidemiology of HIV-1 in the Comunidad Valenciana (Spain): analysis of transmission clusters. Scientific Reports, 7(11584), pp. 1 - 10 . Repositori Institucional . ISSN: 2045-2322

Arora, Natasha; Schuenemann, Verena J.; Jäger, Günter; Peltzer, Alexander; Seitz, Alexander; Herbig, Alexander; Strouhal, Michal; Grillová, Linda; Sánchez-Busó, Leonor; Kühnert, Denise; Bos, Kirsten I.; Juricevic, Nada; Rivero Davis, Leyla; Mikalová, Lenka; Bruisten, Sylvia; Komericki, Peter; French, Patrick; Grant, Paul; Pando, María A.; Gallo Vaulet, Lucía; Rodríguez Fermepin, Marcelo; Martinez, Antonio; Centurion Lara, Arturo; Giacani, Lorenzo; Norris, Steven J.; ¿majs, David; Bosshard, Philipp P.; González-Candelas, Fernando; Nieselt, Kay; Krause, Johannes; Bagheri, Homayoun C. (2017). Origin of modern syphilis and emergence of a pandemic Treponema pallidum cluster. Nature Microbiology, 2, p. 16245 . Repositori Institucional . ISSN: 2058-5276

Patiño-Galindo, J.A.; González-Candelas, F (2017). Comparative analysis of variation and selection in the HCV genome. Infection Genetics And Evolution, 49, pp. 104 - 110 . Repositori Institucional . ISSN: 1567-1348

Patiño-Galindo, Juan Ángel; Torres-Puente, Manoli; Bracho, María A.; Alastrué, Ignacio; Juan, Amparo; Navarro, David; Galindo, María José; Gimeno, Concepción; Ortega, Enrique; González-Candelas, Fernando (2017). Identification of a large, fast-expanding HIV-1 subtype B transmission cluster among MSM in Valencia, Spain. Plos One, 12(2), p. e0171062 . Repositori Institucional . ISSN: 1932-6203

Caro-Pérez,N.; Martínez-Rebollar,M.; Gregori,J.; Quer,J.; González,P.; Gambato,M.; García-González,N.; González-Candelas,F.; Costa,J.; Mallolas,J.; Forns,X.; Laguno,M.; Pérez-del-Pulgar,S. (2017). Phylogenetic analysis of an epidemic outbreak of acute hepatitis C in HIV-infected patients by ultra-deep pyrosequencing. Journal of Clinical Virology, 92, pp. 42 - 47 . Repositori Institucional . ISSN: 1386-6532

Vinuesa V; Bracho MA; Albert E; Solano C; Torres-Puente M; Gimenez E; Gonzalez Candelas F; Navarro D (2017). The impact of virus population diversity on the dynamics of cytomegalovirus DNAemia in allogeneic stem cell transplant recipients. Journal of Virology, 98(10), pp. 2530 - 2542 . https://doi.org/10.1099/jgv.0.000916 . ISSN: 0022-538X

González-Candelas, F; García-González, N; Bracho, MA (2017). A molecular population genetics approach for the identification and forensic assignment of viral transmission groups. Journal of Integrated OMICS, 7(2), p. 12 . ISSN: 2182-0287

Patiño-Galindo,J.A. ;Salvatierra,K.; González-Candelas,F.; López-Labrador, F.X. (2016). Comprehensive screening for naturally-occurring Hepatitis C virus resistance to direct-acting antivirals in the NS3, NS5A and NS5B genes in worldwide isolates from viral genotypes 1-6. Antimicrobial Agents and Chemotherapy, 60(4), pp. 2402 - 2416 . Repositori Institucional . ISSN: 0066-4804

Pujol, J.; Godoy, P.; Soldevila, N.; Castilla, J.; González-Candelas, F.; Mayoral, J.M.; Astray, J.; Garcia, S.; Martin, V.; Tamames, S.; Delgado, M.; Domínguez, A.; CIBERESP Cases and Controls in Pandemic Influenza Working Group. (2016). Social class based on occupation is associated with hospitalization for A(H1N1)pdm09 infection. Comparison between hospitalized and ambulatory cases. Epidemiology and Infection, 144(4), pp. 732 - 740 . https://doi.org/10.1017/S0950268815001892 . ISSN: 0950-2688

Álvarez, M.; Luis-Hidalgo, M.; Bracho, M.A.; Blanquer, A.; Larrea, L.; Villalba, J.; Puig, N.; Planelles, D.; Montoro, J.; González-Candelas, F.; Roig, R. (2016). Transmission of human immunodeficiency virus type-1 by fresh frozen plasma treated with methylene blue and light. Transfusion, 56, pp. 831 - 836 . ISSN: 0041-1132

Martín, V.; Dávila-Batista, V.; Castilla, J.; Godoy, P.; Delgado-Rodríguez, M.; Soldevila, N.; Molina, A.; Fernández-Villa, T.; Astray, J.; Castro, A.; González-Candelas, F.; Mayoral, J.M.; Quintana, J.M.; Domínguez, Á.; the CIBERESP Cases and Controls in Pandemic Influenza Working Group, Spain. (2016). Comparison of body mass index (BMI) with the CUN-BAE body adiposity estimator in the prediction of hypertension and type 2 diabetes. BMC Public Health, 16, p. 82 . Repositori Institucional . ISSN: 1471-2458

Patiño-Galindo, J.;Thomson, M.M.; Pérez-Álvarez, L.; Delgado, E.; Cuevas, M.T.; Fernández-García, A.; Nájera, R.; Iribarren, J.A.; Cilla, G.; López-Soria, L.; Lezaun, M.J.; Cisterna, R.; González-Candelas, F.; (2016). Transmission dynamics of HIV-1 subtype B in the Basque Country, Spain. Infection Genetics And Evolution, 40, pp. 91 - 97 . Repositori Institucional . ISSN: 1567-1348

Godoy, Pere; Castilla, Jesús; Mayoral, José María; Delgado-Rodríguez, Miguel; Martín, Vicente; Astray, Jenaro; Soldevila, Núria; González-Candelas, Fernando; Castro, Ady; Baricot, Maretva; Tamames, Sonia; Alonso, Jordi; Cantón, Rafael; Quintana, José María; Pumarola, Tomás; Domínguez, Angela; and the CIBERESP Cases and Controls in Pandemic Influenza Working Group, Spain (2016). Smoking may increase the risk of hospitalization due to influenza. European Journal of Public Health . https://doi.org/10.1093/eurpub/ckw036 . ISSN: 1101-1262

Morales Suárez-Varela, Maria; Llopis-González, Agustín; González-Candelas, Fernando; Astray, Jenaro; Alonso, Jordi; Garin, Olatz; Castro, Ady; Galán, Juan Carlos; Soldevila, Nuria; Castilla, Jesús; Godoy, Pere; Delgado-Rodríguez, Miguel; Martín, Vicente; Mayoral, Jose María; Pumarola, Tomas; Quintana, José Maria; Tamames, Sonia; Rubio-López, Nuria; Dominguez, Àngela (2016). Economic evaluation of health services costs during pandemic influenza A (H1N1) pdm09 infection in pregnant and non-pregnant women in Spain (2009). Iranian Journal Of Public Health, 45(4), pp. 423 - 434 . Repositori Institucional . ISSN: 2251-6085

Pujol, Jesús; Godoy, Pere; Soldevila, Núria; Castilla, Jesús; González-Candelas, Fernando; Mayoral, José María; Astray, Jenaro; García, Susana; Martín, Vicente; Tamames, Sonia; Delgado, Miguel; Domínguez, Àngela; the CIBERESP Cases and Controls in Pandemic Influenza Working Group (2016). Effect of occupational exposure on A(H1N1)pdm09 infection and hospitalization. Annals of Occupational Hygiene, 60(8), pp. 1009 - 1019 . https://doi.org/10.1093/annhyg/mew044 . ISSN: 0003-4878

Chiner-Oms, Alvaro; González Candelas, Fernando (2016). EvalMSA, a Program to Evaluate Multiple Sequence Alignments and Detect Outliers. Evolutionary Bioinformatics, 12, pp. 277 - 284 . Repositori Institucional . ISSN: 1176-9343

Martín, Vicente; Castilla, Jesús; Godoy, Pere; Delgado-Rodríguez, Miguel; Soldevila, Nuria; Tamames, Fernández-Villa, Tania; Molina, Antonio J.; Astray, Jenaro; Castro, Ady; González-Candelas, Fernando; Mayoral, José María; Quintana, José María; Domínguez, Angela; and the CIBERESP Cases and Controls in Pandemic Influenza Working Group, Spain (2016). High body mass index as a risk factor for hospitalization due to influenza: a case-control study. Archivos de Bronconeumologia, 52(6), pp. 299 - 307 . ISSN: 0300-2896

Sánchez-Busó, L.; Guiral, S.; Crespi, S.; Moya, V.; Camaró, M.L.; Olmos, M.P.; Adrián, F.; Morera, V.; González Morán, F.; Vanaclocha, H.; González-Candelas, F. (2016). Genomic investigation of a legionellosis outbreak in a persistently colonized hotel. Frontiers In Microbiology, 6, p. 1556 . Repositori Institucional . ISSN: 1664-302X

Almagro, G.; Viale, A.M.; Montero, M.; Rahimpour, M.; Muñoz, F.J.; Baroja-Fernández, E.; Bahaji, A.; Zúñiga, M.; González-Candelas, F.; Pozueta-Romero, J. (2015). Comparative genomic and phylogenetic analyses of gammaproteobacterial glg genes traced the origin of the Escherichia coli glycogen glgBXCAP operon to the last common ancestor of the sister orders Enterobacteriales and Pasteurellales. Plos One, 10(1), p. e0115516 . ISSN: 1932-6203

Sánchez-Busó, L.; Olmos, M.P.; Camaró, M.L.; Adrián, F.; Calafat, J.M.; González-Candelas, F. (2015). Phylogenetic analysis of environmental Legionella pneumophila isolates from an endemic area (Alcoy, Spain). Infection Genetics And Evolution, 30(1), pp. 45 - 54 . ISSN: 1567-1348

Pérez-Losada, M.; Arenas, M.; Galán, J.C.; Palero, F.; González-Candelas, F. (2015). Recombination in viruses: mechanisms, methods of study, and evolutionary consequences. Infection Genetics And Evolution, 30, pp. 296 - 307 . ISSN: 1567-1348

Toledo, Diana; Aerny, Nicole; Soldevila, Núria; Baricot, Maretva; Godoy, Pere; Castilla, Jesús; García-Gutierrez, Susana; Torner, Núria; Astray, Jenaro; Mayoral, Jose María; Tamames, Sonia; González Candelas, Fernando; Martín, Vicente; Díaz, José; Domínguez, Angela (2015). Managing an Online Survey about Influenza Vaccination in Primary Healthcare Workers. International Journal Of Environmental Research And Public Health, 12(1), pp. 541 - 553 . Repositori Institucional . ISSN: 1661-7827

Amadoz,A.; González-Candelas, F. (2015). A novel approach to identify candidate prognostic factors for Hepatitis C treatment response integrating clinical and viral genetic data. Evolutionary Bioinformatics, 11, pp. 15 - 24 . ISSN: 1176-9343

González-Candelas,F. (2015). Affaire Maeso: la biologie au coeur de l¿enquête. Recherche, 496, pp. 48 - 52 . ISSN: 0029-5671

Godoy,P.;Castilla,J.;Mayoral,J.M.;Martín,V.;Astray,J.;Torner,N.;Toledo, D.;González-Candelas,F.;García,S.;Diaz-Borregol,J.;Tamames,S.;Domínguez,A.;the Working Group for the Survey on Influenza Vaccination in Primary Health Care Professionals (2015). Influenza vaccination of primary healthcare physicians may be associated with vaccination of their patients: a vaccination coverage study. Bmc Family Practice, 16, p. 44 . ISSN: 1471-2296

Patiño Galindo, J.A.; Torres-Puente, M.; Gimeno, C.; Ortega, E.; Navarro, D.; Galindo, M.J.; Navarro, L.; Navarro, V.; Juan, A.; Belda, J.; Bracho, M. A.; González-Candelas, F.; on behalf of CRIVIH. (2015). Expansion of the CRF19_cpx Variant in Spain. Journal of Clinical Virology, 69, pp. 146 - 149 . ISSN: 1386-6532

Antón, A.; García, S.; Soldevila, N.; González-Candelas, F.; Godoy, P.; Castilla, J.; Mayoral, J.M.; Astray, J.; Martín, V.; Tamames, S.; Toledo, D.; Aguirre, U.; Domínguez, A.; and the CIBERESP Working Group for the Survey on Influenza Vaccination in Primary Health Care Workers. (2015). Visualizing knowledge and attitude factors related to influenza vaccination of physicians. Vaccine, 33(7), pp. 885 - 891 . ISSN: 1358-8745

Sánchez-Busó, L.; Coscollá, M.; Palero, F.; Camaró, M.L.; Gimeno, A.; Moreno, P.; Escribano, I.; López Perezagua, M.M.; Colomina, J.; Vanaclocha, H.; González-Candelas, F. (2015). Geographical and temporal structure of Legionella pneumophila sequence types in Comunitat Valenciana (Spain), 1998-2013. Applied and Environmental Microbiology, 81(20), pp. 7106 - 7113 . ISSN: 0099-2240

155. Garcia-Etxebarria, K.; Bracho, M.A.; Galán, J.C.; Pumarola, T.; Castilla, J.; Ortiz de Lejarazu, R.; Rodriguez-Dominguez, M.; Bonet, N.; Garcia-Garcerà, M.; Domínguez, A.; González-Candelas, F.; Calafell, F., on behalf of the CIBERESP Cases and Controls in Pandemic Influenza Working Group. (2015). No major host genetic risk factor contributed to A(H1N1)2009 influenza severity. Plos One, 10(9), p. E00135983 . ISSN: 1932-6203

González-Candelas,F.; Bracho,M.A.; Comas,I.; d¿Auria,G.; Dzunková,M.; García,R.; Gosalbes,M.J.; Isaac,S.;Latorre,A.; López-Labrador,F.X.; Patiño Galindo,J.Á.; Palero,F.; Pérez-Brocal,V.; Pérez-Cobas,A.E.; Sánchez-Busó,L.; Silva, F.J.; Vázquez-Castellanos,J.F.; Moya,A. (2014). Estudios de epidemiología molecular en población inmigrante en España. Revista Espanola de Salud Publica, 88(6), pp. 819 - 828 . Repositori Institucional . ISSN: 1135-5727

Bracho, M.A.; Sentandreu, V.; Alastrué, I.; Belda, J.; Juan, A.; Fernández-García, E.; Santos, C.; Zafra, T.; Tasa, T.; González-Candelas, F. (2014). Emerging trends in CRF02_AG transmission among men who have sex with men in Spain. Journal of Acquired Immune Deficiency Syndromes, 65(3), pp. e130 - e133 . ISSN: 1525-4135

Pérez-Lago,L.; Comas,I.; Navarro,Y.; González-Candelas,F.; Herranz,M.; Bouza,E.; García-de-Viedma,D. (2014). Whole Genome Sequencing analysis of intrapatient microevolution in Mycobacterium tuberculosis: Potential impact on the inference of tuberculosis transmission. Journal of Infectious Diseases, 209(1), pp. 98 - 108 . ISSN: 0022-1899

Morales-Suárez-Varela, M.; González-Candelas, F.; Astray, J.; Alonso, J.; Castro, A.; Cantón, R.; Galán, J.C.; Garin, O.; Soldevila, N.; Baricot, M.; Castilla, J.; Godoy, P.; Delgado-Rodríguez, M.; Martín, V.; Mayoral, J.M.; Pumarola, T.; Quintana, J.M.; Tamames, S.; LLopis-González, A.; Gimeno-Clemente, N.; Domínguez, Á.; CIBERESP Cases and Controls in Pandemic Influenza Working Group, Spain (2014). Pandemic influenza A (H1N1) in non-vaccinated, pregnant women in Spain (2009-2010). Maternal And Child Health Journal, 18(6), pp. 1454 - 1461 . ISSN: 1092-7875

Coscollá, M.; Fernández, C.; Colomina, J.; Sánchez-Busó, L.; González-Candelas, F. (2014). Mixed infection by Legionella pneumophila in outbreak patients. International Journal of Medical Microbiology, 304(3-4), pp. 307 - 313 . ISSN: 1438-4221

Matas, M.; Picornell, A.; Cifuentes, C.; Payeras, A.; Homar, F.; González-Candelas, F.; López-Labrador, F.X.; Moya, A.; Ramon, C.; Castro, J.A. (2014). Relating the outcome of HCV infection with different host SNP polymorphisms in a Majorcan coinfected HCV-HIV population treated with pegIFN-RBV. International Microbiology, 17(1), pp. 11 - 20 . Repositori Institucional . ISSN: 1139-6709

Lara,J.; López-Labrador,F.X.; González-Candelas,F.; Berenguer,M.; Khudyakov,Y.E. (2014). Computational models of liver fibrosis progression for hepatitis C virus chronic infection. Bmc Bioinformatics, 15(Suppl.8), p. S5 . ISSN: 1471-2105

Sánchez-Busó,L.; Comas,I.; Jorques,G.; González-Candelas,F. (2014). Recombination drives genome evolution in outbreak-related Legionella pneumophila isolates. Nature Genetics, 46(11), pp. 1205 - 1211 . https://doi.org/10.1038/ng.3114 . ISSN: 1061-4036

Morales Suárez-Varela,M.; González-Candelas,F.; Astray,J.; Alonso,J.; Garín,O.; Castro,A.; Galán,J.C.; Baricot,M.; Castilla,J.; Godoy,P.; Delgado-Rodríguez,M.; Martín,V.; Mayoral,J.M.; Pumarola,T.; Quintana,J.M.; Tamames,S.; Llopis González,A.; Domínguez,À.; CIBERESP Cases and Controls in Pandemic Influenza Working Group, Spain (2014). Pandemic influenza A(H1N1) infection in pregnant and non-pregnant women in Spain (2009-2010). Japanese Journal of Infectious Diseases, 67, pp. 163 - 171 . ISSN: 1344-6304

Gallego-García, Pilar; Estévez-Gómez, Nuria; De Chiara, Loretta; Alvariño, Pilar; M. Juiz-González, Pedro; Torres-Beceiro, Isabel; Poza, Margarita; Vallejo, Juan A.; Rumbo-Feal, Soraya; Conde-Pérez, Kelly; Aja-Macaya, Pablo; Ladra, Susana; Moreno-Flores, Antonio; Gude-González, María J.; Coira, Amparo; Aguilera, Antonio; Costa-Alcalde, José J.; Trastoy, Rocío; Barbeito-Castiñeiras, Gema; García-Souto, Daniel; Tubio, José M. C.; Trigo-Daporta, Matilde; Camacho-Zamora, Pablo; García Costa, Juan; González-Domínguez, María; Canoura-Fernández, Luis; González-Peña, Daniel; Pérez, Sonia; Cabrera, Jorge J.; Daviña, Carlos; Veiga, Maria Isabel; Sousa, João Carlos; Osório, Nuno S.; Comas, Iñaki; González-Candelas, Fernando; Hong, Samuel L.; Bollen, Nena; Dellicour, Simon; Baele, Guy; Suchard, Marc A.; Lemey, Philippe; Agulla, Andrés; Bou, Germán; Alonso-García, Pilar; Pérez-del-Molino, María Luisa; García-Campello, Marta; Paz-Vidal, Isabel; Regueiro, Benito; EPICOVIGAL Consortium; Posada, David (2024). Dispersal history of SARS-CoV-2 in Galicia, Spain. Journal of Medical Virology, 96(7), pp. e29773-1 - 13 . Repositori Institucional . ISSN: 0146-6615

Mulet-Bayona, Juan Vicente; Cancino-Muñoz, Irving; Salvador-García, Carme; Tormo-Palop, Nuria; Guna-Serrano, María del Remedio; Ferrer-Gómez, Carolina; Melero-García, Mercedes; González-Candelas, Fernando; Gimeno-Cardona, Concepción (2024). Genotypic and phenotypic characterisation of a nosocomial outbreak of Candida auris in Spain during 5 years. Mycoses, 67(8), pp. e13776-1 - 10 . Repositori Institucional . ISSN: 0933-7407

Tesis, tesines i treballs

Neris García González . (2023) . Genomic epidemiology and antimicrobial resistance of Klebsiella pneumoniae in the Comunidad Valenciana (Tesi Doctoral amb Menció Internacional) . Universitat de València-Estudi General. https://roderic.uv.es/handle/10550/88748

Beatriz Beamud Aranguren . (2023) . The effect of the genetic background on phage infectivity in an encapsulated host (Tesi Doctoral) . Universitat de València-Estudi General. https://roderic.uv.es/handle/10550/88740

Francisco Javier Valls Monzó . (2023) . Reconstrucción del core genome ancestral de los ST11 y ST307 de Klebsiella pneumoniae para el análisis de datos NGS (Treball de Màster o de Tercer Cicle de 12 o mes crèdits) . Universitat de València-Estudi General.

Jordi Sevilla Fortuny . (2023) . Predicción genómica de resistencia a antibióticos en Klebsiella pneumoniae (Treball Fi de Grau) . Universitat de València-Estudi General.

Pedro Alba Hernández . (2023) . Desarrollo de un pipeline bioinformático para análisis metagenómico de muestras respiratorias (Treball Fi de Grau) . Universitat de València-Estudi General.

Agustin Mayans Moncho . (2023) . Transferencia genética horizontal entre dominios (Treball Fi de Grau) . Universitat de València-Estudi General.

Lorena López Roig . (2023) . Origen y evolución de las halocinas (Treball Fi de Grau) . Universitat de València-Estudi General.

Mejía Castañeda, Lorena . (2022) . Epidemiología genómica: de la transmisión a la evolución de microorganismos patógenos (Tesi Doctoral) . Universidad de Valencia.

Miguel Mayor Tortosa . (2022) . Epidemiology and pathogenesis of human Coronaviruses (Treball Fi de Grau) . Universitat de València-Estudi General.

Paula Mompó Gisbert . (2022) . Búsqueda de actividad lisógena en bacteriófagos de interés terapéutico (Treball Fi de Grau) . Universitat de València-Estudi General.