**Universitat de ValènciaCurriculum Vitae

FERNANDO GONZALEZ CANDELAS
E-mail fernando.gonzalez(a)uv.es
Professional category CATEDRÁTICO DE UNIVERSIDAD
Department INSTITUT DE BIOLOGIA INTEGRATIVA DE SISTEMES (I2SYSBIO)
Phone number 963543653

Academic training

Biologia . Facultad CC. Biológicas, Univ. Valencia . 30/06/1982 . (Diploma / Degree / Activities)
Biologia . Facultad CC. Biológicas, Univ. Valencia . 23/12/1987 . (Ph.D.)

Activity interests

Epidemiología molecular de enfermedades infecciosas . Instituto Cavanilles de Biodiversidad y Biología Evolutiva . (01/01/2003)
Filogenómica y evolución de genomas bacterianos . Instituto Cavanilles de Biodiversidad y Biología Evolutiva . (01/01/2003)

Participation in Committees and Representations

Comisión de Evaluación de Proyectos, programa BFU . Subprograma Biología Molecular y Celular . 2015
Comité Científico de la Fundación para el Fomento de la Investigación Sanitaria y Biomédica de la Comunidad Valenciana (FISABIO) . (31/08/2021) . Investigación Biomédica y Sanitaria . 25/01/2017 - 31/08/2021
Miembro experto de Fonds Wetenschappelijk Onderzoek (Fundación de Investigación de Flandes), Bélgica . (31/12/2018) . Biodiversidad y Ecología . 01/01/2017 - 31/12/2018
Instituto de Microbiología. Universidad San Francisco. Quito, Ecuador . Investigación interdisciplinar en el ámbito de la Microbiologóa . 05/07/2018
Scientific Chairperson del panel 3 (Biodiversidad y Ecología) de Fonds Wetenschappelijk Onderzoek (Fundación de Investigación de Flandes), Bélgica . (31/12/2022) . Biodiversidad y Ecología . 01/01/2019 - 31/12/2022
Miembro del Comité Asesor 3, Biología Celular y Molecular, de la Comisión Nacional Evaluadora de la Actividad Investigadora . (31/12/2019) . Evaluación actividad investigadora . 20/02/2019 - 31/12/2019
Comité Científico del Programa Valenciano de Investigación Vacunal COVID-19 . Asesoría Científica . 01/03/2021
Editor-in-Chief . Journal Infection Genetics and Evolution . 01/01/2022
Associate Editor . (31/12/2022) . Journal Scientific Reports . 01/01/2018 - 31/12/2022
Miembro Comité Técnico Coordinador . RELECOV, Red de Laboratorios de Secuenciación de SARS-CoV-2 . 01/05/2021

Projects

Red temática en genómica de la adaptación () . 2023 - 2025 . Ref.RED2022-134865-T . Ministerio de Ciencia e Innovación . PI: Carles VIla
Vigilancia genómica de SARS-CoV-2 en la Comunitat Valenciana. BOL00956-Estrategia Integral de Investigación en SARS-CoV2 y enfermedad COVID-19, Plan de Recuperación/Next Generation, Linea 13: Enfermedades Infecciosas y Epidemias Emergentes () . 2022 . Ref.20F01010202B_SANVAR12RVRA . Conselleria de Sanitat Universal i Salut Pública. Generalitat Valenciana. . PI: Fernando González Candelas
Genómica y evolución de bacterias resistentes a antibióticos: de la epidemiología molecular a la filogenómica () . 2022 - 2025 . Ref.PID2021-127010OB-I00 . Ministerio de Ciencia e Innovación . PI: Fernando González Candelas . (1 Researchers)
Expanding the One Health approach to combat antimicrobial resistance () . 2022 - 2025 . Ref.CIPROM/2021/053 . Direcció General de Ciència i Investigació. Conselleria d'Innovació, Universitats, Ciència i Societat Digital. Generalitat Valenciana . PI: Fernando González Candelas . (7 Researchers)
Investigación y desarrollo de un sistema para facilitar el estudio y análisis del genoma del COVID-19 a través de técnicas de secuenciación de nueva generación () . 2021 . Flomics Biotech S.L. . PI: Fernando González Candelas
Real time surveillance of SARS-CoV-2 S mutations () . 2021 - 2022 . CSIC . PI: Mireia Coscollá ; Santiago Elena
PREPARE - COVID-19 preparedness platform () . 2021 - 2022 . X . PI: Fernando González Candelas
"Identificación y cuantificación de contaminantes emergentes en aguas residuales (virus y fármacos) y posibles repercusiones en la calidad de las aguas () . 2021 - 2022 . General de Análisis, Materiales y Servicios, S.L. . PI: Fernando González Candelas
Evaluation of molecular point-of-care Xpert® Xpress SARS-CoV-2 detection implementation in resource limited settings () . 2021 - 2023 . Ref.EDCPT2 EXPERT-CoV2 . European & Developing Countries Clinical Trials Partnership, Research and Innovation Action (RIA) . PI: Daniel Minja
Addressing unknowns of COVID-19 transmission and infection combining pathogen genomics and epidemiology to inform public health interventions () . 2020 - 2021 . Ref.202020E085 . CSIC . PI: Iñaki Comas Espadas

Journal Publications

Mulet-Bayona, Juan Vicente; Cancino-Muñoz, Irving; Salvador-García, Carme; Tormo-Palop, Nuria; Guna-Serrano, María del Remedio; Ferrer-Gómez, Carolina; Melero-García, Mercedes; González-Candelas, Fernando; Gimeno-Cardona, Concepción (2024). Genotypic and phenotypic characterisation of a nosocomial outbreak of Candida auris in Spain during 5 years. Mycoses, 67(8), pp. e13776-1 - 10 . Institutional Repository . ISSN: 0933-7407
Gallego-García, Pilar; Estévez-Gómez, Nuria; De Chiara, Loretta; Alvariño, Pilar; M. Juiz-González, Pedro; Torres-Beceiro, Isabel; Poza, Margarita; Vallejo, Juan A.; Rumbo-Feal, Soraya; Conde-Pérez, Kelly; Aja-Macaya, Pablo; Ladra, Susana; Moreno-Flores, Antonio; Gude-González, María J.; Coira, Amparo; Aguilera, Antonio; Costa-Alcalde, José J.; Trastoy, Rocío; Barbeito-Castiñeiras, Gema; García-Souto, Daniel; Tubio, José M. C.; Trigo-Daporta, Matilde; Camacho-Zamora, Pablo; García Costa, Juan; González-Domínguez, María; Canoura-Fernández, Luis; González-Peña, Daniel; Pérez, Sonia; Cabrera, Jorge J.; Daviña, Carlos; Veiga, Maria Isabel; Sousa, João Carlos; Osório, Nuno S.; Comas, Iñaki; González-Candelas, Fernando; Hong, Samuel L.; Bollen, Nena; Dellicour, Simon; Baele, Guy; Suchard, Marc A.; Lemey, Philippe; Agulla, Andrés; Bou, Germán; Alonso-García, Pilar; Pérez-del-Molino, María Luisa; García-Campello, Marta; Paz-Vidal, Isabel; Regueiro, Benito; EPICOVIGAL Consortium; Posada, David (2024). Dispersal history of SARS-CoV-2 in Galicia, Spain. Journal of Medical Virology, 96(7), pp. e29773-1 - 13 . Institutional Repository . ISSN: 0146-6615
Majander, Kerttu; Pla-Diaz, Marta; du Plessis, Louis; Arora, Natasha; Pezo Lanfranco, Luis; Eggers, Sabine; Filippini, Jose; González-Candelas, Fernando; Schuenemann, Verena J (2024). Redefining the treponemal history through pre-Columbian genomes from Brazil. Nature, 627, pp. 182 - 188 . https://doi.org/10.1038/s41586-023-06965-x . ISSN: 0028-0836
García-Marín, Ana María; Cancino-Muñoz, Irving; Torres-Puente, Manuela; Villamayor, Luis M; Borrás, Rafael; Borrás-Máñez, María; Bosque, Montserrat; Camarena, Juan J; Colomer-Roig, Ester; Colomina, Javier; Escribano, Isabel; Esparcia-Rodríguez, Óscar; Gil-Brusola, Ana; Gimeno, Concepcion; Gimeno-Gascón, Adelina; Gomila-Sard, Bárbara; Gónzales-Granda, Damiana; Gonzalo-Jiménez, Nieves; Guna-Serrano, María Remedios; López-Hontangas, José Luis; Martín-González, Coral; Moreno-Muñoz, Rosario; Navarro, David; Navarro, María; Orta, Nieves; Pérez, Elvira; Prat, Josep; Rodriguez, Juan Carlos; Ruiz-García, María Montserrat; Vanaclocha, Hermelinda; González-Candelas, Fernando; Furio, Victoria; Comas, Iñaki (2024). Role of the first WHO mutation catalogue in the diagnosis of antibiotic resistance in Mycobacterium tuberculosis in the Valencia Region, Spain: a retrospective genomic analysis. Lancet Microbe, 5(1), pp. e43 - e51 . https://doi.org/10.1016/S2666-5247(23)00252-5 . ISSN: 2666-5247
Álvarez-Herrera, Miguel; Sevilla, Jordi; Ruiz-Rodríguez, Paula; Vergara, Andrea; Vila, Jordi; Cano-Jiménez, Pablo; González-Candelas, Fernando; Comas, Iñaki; Coscolla, Mireia (2024). VIPERA: Viral Intra-Patient Evolution Reporting and Analysis. Virus Evolution, 10(1), p. veae018 . https://doi.org/10.1093/ve/veae018 . ISSN: 2057-1577
García-González, N.; Fuster, B.; Tormo, N.; Salvador, C.; Gimeno, C.; González-Candelas, F. (2023). Genomic analysis of the initial dissemination of carbapenem-resistant Klebsiella pneumoniae clones in a tertiary hospital. Microbial Genomics, 9(6), p. 001032 . https://doi.org/10.1099/mgen.0.001032 . ISSN: 2057-5858
Arnau, Vicente; Díaz-Villanueva, Wladimiro; Mifsut Benet, Jorge; Villasante, Paula; Beamud, Beatriz; Mompó, Paula; Sanjuan, Rafael; González-Candelas, Fernando; Domingo-Calap, Pilar; Dzunková, Mária (2023). Inference of the life cycle of environmental phages from genomic signature distances to their hosts. Viruses, 15(5), p. 1196 . Institutional Repository . ISSN: 1999-4915
Camacho, Jorge; Giménez, Estela; Albert, Eliseo; Zulaica, Joao; Álvarez-Rodríguez, Beatriz; Torres, Ignacio; Rusu, Luciana; Burgos, Javier S.; Peiró, Salvador; Vanaclocha, Hermelinda; Limón, Ramón; Alcaraz, Maria Jesús; Sánchez-Payá, José; Díez-Domingo, Javier; Comas, Iñaki; González-Candelas, Fernando; Geller, Ron; Navarro, David (2023). Cumulative incidence of SARS-CoV-2 infection in the general population of the Valencian Community (Spain) after the surge of the Omicron BA.1 variant. Journal of Medical Virology, 95(1), p. e28284 . https://doi.org/10.1002/jmv.28284 . ISSN: 0146-6615
Beamud, Beatriz; García-González, Neris; Gómez-Ortega, Mar; González-Candelas, Fernando; Domingo-Calap, Pilar; Sanjuán, Rafael (2023). Genetic determinants of host tropism in Klebsiella phages. Cell Reports, 42(2), p. 112048 . https://doi.org/10.1016/j.celrep.2023.112048 . ISSN: 2211-1247
García-González, Neris; Beamud, Beatriz; Fuster, Begoña; Giner, Salvador; Domínguez, Mª Victoria; Sánchez, Antonia; Sevilla, Jordi; Coque, Teresa; Gimeno, Concepción; González-Candelas, Fernando (2023). Tracking the emergence and dissemination of a blaNDM-23 gene in a multidrug resistance plasmid of K. pneumoniae. Microbiology Spectrum, 11(2), p. 2585-22 . https://doi.org/10.1128/spectrum.02585-22 . ISSN: 2165-0497
Vázquez-Morón, Sonia; Iglesias-Caballero, María; Lepe, José Antonio; Garcia, Federico; Melón, Santiago; Marimon, José M.; García de Viedma, Darío; Folgueira, Maria Dolores; Galán, Juan Carlos; López-Causapé, Carla; Benito-Ruesca, Rafael; Alcoba-Florez, Julia; Gonzalez Candelas, Fernando; Toro, María de; Fajardo, Miguel; Ezpeleta, Carmen; Lázaro, Fernando; Pérez Castro, Sonia; Cuesta, Isabel; Zaballos, Angel; Pozo, Francisco; Casas, Inmaculada; and members of the RELECOV network (2023). Enhancing SARS-CoV-2 surveillance through regular genomic sequencing in Spain: the RELECOV network. International Journal Of Molecular Sciences, 24(10), p. 8573 . https://doi.org/10.3390/ijms24108573 . ISSN: 1661-6596
Sánchez-Serrano, Andrea; Mejía, Lorena; Camaró, Maria Luisa; Ortolá-Malvar, Susana; Llácer-Luna, Martín; García-González, Neris; González-Candelas, Fernando (2023). Genomic surveillance of Salmonella from the Comunitat Valenciana (Spain. Antibiotics-Basel, 12(5), p. 883 . https://doi.org/10.3390/antibiotics12050883 . ISSN: 2079-6382
Tantaloa, Lauren C.; Liebermanb, Nicole A. P.; Pérez-Mañá, Clara; Vall Mayans, Marti; Ubalse, Maria; González-Beiras, Camila; Rodríguez-Gascón, Alicia; Canut, Andrés; González-Candelas, Fernando; Mueller, John; Greninger, Alexander L.; Giacani, Lorenzo; Mitjà, Oriol (2023). In vitro Antimicrobial Susceptibility of Treponema pallidum subsp. pallidum, the syphilis agent. Lancet Microbe, 4(12), pp. e0994 - e1004 . ISSN: 2666-5247
Saludes, Verónica; Bordoy, Antoni E.; Yela, Elena; Turú, Elisabet; Not, Anna; López-Corbeto, Evelin; Egea-Cortés, Laia; González-Candelas, Fernando; Casabona, Jordi; Group for the Study and Control of Infectious Diseases in Prison (GRUMIP); Marco, Andrés; Martró, Elisa (2023). Incidence and molecular epidemiology of hepatitis C virus reinfection in prisons in Catalonia, Spain (Re-HCV study). Scientific Reports, 13, p. 16012 . https://doi.org/10.1038/s41598-023-42701-1 . ISSN: 2045-2322
Mejía, Lorena; Espinosa-Mata, Estefanía; Freire, Ana Lucía; Zapata, Sonia; González-Candelas, Fernando (2023). Listeria monocytogenes, a silent foodborne pathogen in Ecuador. Frontiers In Microbiology, 14 . https://doi.org/10.3389/fmicb.2023.1278860 . ISSN: 1664-302X
Hufsky, Franziska; Abecasis, Ana; Babaian, Artem; Beck, Sebastian; Brierley, Liam; Dellicour, Simon; Eggeling, Christian; Elena, Santiago F.; Gieraths, Udo; Ha, Anh; Harvey, Will; Jones, Terry C.; Lamkiewicz, Kevin; Lencioni Lovate, Gabriel; Luecking, Dominik; Machyna, Martin; Nishimura, Luca; Nocke, Maximilian K.; Renard, Bernhard Y.; Sakaguchi, Shoichi; Sakellaridi, Lygeri; Spangenberg, Jannes; Tarradas-Alemany, Maria; Triebel, Sandra; Vakulenko, Yulia; Wijesekara, Yasas; González-Candelas, Fernando; Krautwurst, Sarah; Pérez-Cataluña, Alba; Randazzo, Walter; Sánchez, Gloria; Marz, Manja (2023). The International Virus Bioinformatics Meeting 2023. Viruses, 15(10), p. 2031 . https://doi.org/10.3390/v15102031 . ISSN: 1999-4915
Barberá-Riera, María; de Llanos, Rosa; Barneo-Muñoz, Manuela; Bijlsma, Lubertus; Celma, Alberto; Comas, Iñaki; Gomila, Bárbara; González-Candelas, Fernando; Goterris-Cerezuelo, Rafael; Martínez, Ferran; Santateresa, Ernesto; Torres-Puente, Manuela; Zamorano-López, Núria; Bretón-Ramos, Rafael; Aguilar-Pedriguer, Eduardo; Rebagliato, Marisa; Bellido-Blasco, Juan; Hernández, Félix (2023). Wastewater monitoring of a community Covid-19 outbreak in a Spanish municipality. Journal of Environmental Exposure Assessment, 2, p. 16 . https://doi.org/10.20517/jeea.2023.05 . ISSN: 2771-5949
Sánchez-Serrano, Andrea; García-González, Neris; Bonillo Jimenez, Daniel; Ruiz-Hueso, Paula; Vilanova, Rebeca; Campo, Israel; Tormo, Nuria; Salvador, Carme; Gimeno, Concepción; González-Candelas, Fernando (2022). Molecular Epidemiology of Methicillin-Resistant Staphylococcus aureus in a Tertiary Hospital from the Comunidad Valenciana (Spain). Microbial Drug Resistance, 28(12), pp. 1071 - 1078 . https://doi.org/10.1089/mdr.2022.0027 . ISSN: 1076-6294
Ignacio Torres; Estela Giménez; Eliseo Albert; Joao Zulaica; Beatriz Álvarez-Rodríguez; Javier S. Burgos; Salvador Peiró; Ramón Limón; Hermelinda Vanaclocha; Celia Rodado; Pilar Botija; Amelia Sifre; Borja Tur; Rosa Andrés Lozano; Iria Orosa; MªÁngeles Vicente-Ruiz; Ramón J. Carrión; Maria Á. Clari; José Sánchez-Payá; Javier Díez-Domingo; Iñaki Comas; Fernando González-Candelas; Ron Geller; David Navarro; the Valencian vaccine research program (ProVaVac) study group Comirnaty (2022). SARS-CoV-2 Omicron BA.1 variant breakthrough infections in nursing home residents after an homologous third dose of the Comirnaty® COVID-19 vaccine: Looking for correlates of protection. Journal of Medical Virology . ISSN: 0146-6615
Estela Gimenez; Eliseo Albert; Joao Zulaica; Ignacio Torres; Luciana Rusu; Alicia Rodriguez Moreno; Javier S. Burgos; Salvador Peiro; Dolores Salas; Hermelinda Vanaclocha; Ramon Limon; Maria Jesus Alcaraz; Jose  Sanchez-Pay; Javier Diez-Domingo4, Inaki Comas; Fernando Gonzales-Candelas; Ron Geller;David Navarro (2022). SARS-CoV-2 adaptive immunity in nursing home residents following a third dose of the Comirnaty® COVID-19 vaccine. Clinical Infectious Diseases . https://doi.org/10.1093/cid/ciac223 . ISSN: 1058-4838
Albert E; Burgos JS; Peiró S; Salas D; Vanaclocha H; Giménez E; Limón R; Alcaraz MJ; Sánchez-Payá J; Díez-Domingo J; Navarro D; Valencian Vaccine Research Programme (ProVaVac) Study Group.(Burgos, J.S.; Meneu de Guillerna, R.; Vanaclocha Luna, H.; Burks, D.J.; Comas, I.; Díez-Domingo, J.; Peiro, S.; González-Candelas, F.; Ferrer Albiach, C.; Hernández-Aguado, I.; Oliver Ramírez, N.; Sánchez-Payá, J.; Vento Torres, M.; Zapater Latorre, E.; Navarro, D.) (2022). Immunological response against SARS-CoV-2 following full-dose administration of Comirnaty® COVID-19 vaccine in nursing home residents. Clinical Microbiology and Infection, 28(2), pp. 279 - 284 . https://doi.org/10.1016/j.cmi.2021.09.031 . ISSN: 1198-743X
Rodríguez-Grande, C.; Alcalá, L.; Estévez, A.; Sola-Campoy, P.J.; Buenestado-Serrano, S.; Martínez-Laperche, C.; Manuel de la Cueva, V.; Alonso, R.; Andrés-Zayas, C.a; Adán-Jiménez, J.; Losada, C.; Rico-Luna, C.; Comas, I.; González-Candelas, F.; Catalán, P.; Muñoz, P.; Pérez-Lago, L.; García de Viedma, D.; on behalf of the Gregorio Marañón Microbiology-ID COVID 19 Study Group. (2022). Systematic genomic and clinical analysis of SARS-CoV-2 reinfections and recurrences involving the same strain. Emerging Infectious Diseases, 28(1), pp. 85 - 94 . https://doi.org/10.3201/eid2801.211952 . ISSN: 1080-6040
Pla-Díaz, M.; Sánchez-Busó, L.; Giacani, L.; ¿majs, D.; Bosshard, P.P.; Bagheri, H.C.; Schuenemann, V. J.; Nieselt, K.; Arora, N.; González-Candelas, F. (2022). Evolutionary processes in the emergence and recent spread of the syphilis agent, Treponema pallidum. Molecular Biology and Evolution, 39(1), p. msab318 . ISSN: 0737-4038
Costa, Rosa; Olea, Beatriz; Bracho, María Alma; Albert, Eliseo; de Michelena, Paula; Martínez-Costa, Cecilia; González-Candelas, Fernando; Navarro, David (2022). RNA viral loads of SARS-CoV-2 Alpha and Delta variants in nasopharyngeal specimens at diagnosis stratified by age, clinical presentation and vaccination status. Journal of Infection, 84(4), pp. 582 - 584 . ISSN: 0163-4453
Lopez-Causape, Carla; Fraile-Ribot, Pablo A.; Jiménez-Serrano, Santiago; Cabot, Gabriel; del Barrio-Tofiño, Ester; Prado, Maria Carmen; Linares, Juana Maria; López, Aranzazu; Hurtado, Adoración; Riera, Elena; Serra, Antoni; Roselló, Eva; Carbó, Lluis; Fernández-Baca, Maria Victoria; Gallegos, Carmen; Saurina, Juan; Arteaga, Emilio; Salom, Maria Magdalena; Salvá, Antonia; Nicolau, Antoni; Gonzalez-Candelas, Fernando; Comas, Iñaki; Oliver, Antonio (2022). A genomic snapshot of the SARS-CoV-2 pandemic in the Balearic Islands. Frontiers In Microbiology, 12, p. 803827 . https://doi.org/10.3389/fmicb.2021.803827 . ISSN: 1664-302X
Francés-Cuesta, Carlos; Ansari, Iván; Fernández-Garayzábal, José Francisco, Gibello, Alicia; González-Candelas, Fernando (2022). Comparative genomics and evolutionary analysis of Lactococcus garvieae isolated from human endocarditis. Microbial Genomics, 8, p. 771 . ISSN: 2057-5858
de Michelena, Paula; Torres, Ignacio; Albert, Eliseo; Bracho, Alma; González-Candelas, Fernando; Navarro, David (2022). Impact of time elapsed since full vaccination on SARS-CoV-2 RNA load in Delta-variant breakthrough COVID-19s. Journal of Infection, 84(4), pp. 579 - 613 . https://doi.org/10.1016/j.jinf.2022.01.006 . ISSN: 0163-4453
Torres, Ignacio; Bellido-Blasco, Juan B.; Gimeno, Concepción; Burgos, Javier S.; Albert, Eliseo; Moya-Malo, Raúl; Gascó-Laborda, Juan Carlos; Tornero, Ana; Soriano, Josefa; Meseguer-Ferrer, Noemí; Martínez-Serrano, María; Ortíz-Rambla, Javier; Buj, Helena; Hernández, Noelia; Peiró, Salvador; Salas, Dolores; Limón, Ramón; Vanaclocha, Hermelinda; Sánchez-Payá, José; Díez-Domingo, Javier; Comas, Iñaki; González-Candelas, Fernando; Navarro, David. (2022). SARS-CoV-2 Delta-variant breakthrough infections in nursing home residents at mid-term after Comirnaty® COVID-19 vaccination. Journal of Medical Virology, 94(8), pp. 3776 - 3782 . https://doi.org/10.1002/jmv.27799 . ISSN: 0146-6615
hufsky, Franziska; Beslic, Denis; Boeckaerts, Dimitri; Duchene, Sebastian; Gonzalez-Tortuero, Enrique; Gruber, Andreas; Guo, Jiarong; Jansen, Daan; Juma, John; Kongkitimano, Kunaphas; Luque, Antoni; Ritsch, Muriel; Lenconi Lovate, Gabriel; Nishimura, Luca; Pas, Célia; Domingo, Esteban; Hodcroft, Emma; Lemey, Philippe; Sullivan, Matthew B.; Weber, Friedemann; González-Candelas, Fernando; Krautwurst, Sarah; Pérez-Cataluña, Alba; Randazzo, Walter; Sánchez Moragas, Gloria; Marz, Manja (2022). The International Virus Bioinformatics Meeting 2022. Viruses, 14(5), p. 973 . https://doi.org/10.3390/v14050973 . ISSN: 1999-4915
Mejía, Lorena; Prado, Belén; Cárdenas, Paúl; Trueba, Gabriel; González-Candelas, Fernando (2022). The impact of genetic recombination on pathogenic Leptospira. Infection Genetics And Evolution, 102, p. 105313 . https://doi.org/10.1016/j.meegid.2022.105313 . ISSN: 1567-1348
de Michelena, Paula; Olea, Beatriz; Torres, Ignacio; González-Candelas, Fernando; Navarro, David (2022). SARS-CoV-2 RNA load in nasopharyngeal specimens from outpatients with breakthrough COVID-19 due to Omicron BA.1 and BA.2. Journal of Medical Virology, 94(12), pp. 5836 - 5840 . https://doi.org/10.1002/jmv.28079 . ISSN: 0146-6615
de Michelena, Paula; Torres, Ignacio; -Cuevas Ferrando, Enric; González-Candelas, Fernando; Sánchez, Gloria; Navarro, David (2022). SARS-CoV-2 RNA and infectious viral loads in vaccine-breakthrough COVID-19 due to the Delta and Omicron variants. Clinical Microbiology and Infection, 29(2), pp. 256.e1 - 256.e4 . ISSN: 1198-743X
Bordoy, Antoni; Vallès, Xavier; Not, Anna; Chiner-Oms, Alvaro; Saludes, Verónica; Torres Cervós, Judit; Roset Roig, Anna; Juan-Andrés, Concha; Sureda, Helena; Pardo-Amil, Vanessa; García, Irene; Guitart Rossell, Gemma; Cambra Cibeira, Laura; Casañ, Cristina; Giménez, Montserrat; Blanco, Ignacio; Torres-Puente, Manuela; Cancino-Muñoz, Irving; González-Candelas, Fernando; Comas, Iñaki, Martró, Elisa (2022). Epidemiological and genomic analysis of a large SARS-CoV-2 outbreak in a long-term care facility in Catalonia, Spain. Msphere, 7(6), p. 346 . https://doi.org/10.1128/msphere.00346-22 . ISSN: 2379-5042
Carmona-Salido, Hector; Fouz, Belen; Sanjuán, Eva; Carda Diéguez, Miguel; Delannoy, Christian; García-González, Neris; González-Candelas, Fernando; Amaro, Carmen (2021). The widespread presence of a family of fish virulence plasmids in Vibrio vulnificus stresses its relevance as a zoonotic pathogen linked to fish farms. Emerging Microbes & Infections, 10(1), pp. 2128 - 2140 . Institutional Repository . ISSN: 2222-1751
Ruiz-Rodríguez, Paula; Frances-Gomez, Clara; Chiner-Oms, Álvaro; López, Mariana G.; Jiménez Serrano, Santiago; Cancino-Muñoz, Irving; Ruiz-Hueso, Paula; Torres-Puente, Manuela; Bracho, Maria Alma; D'Auria, Giuseppe; Martinez-Priego, Llúcia; Guerreiro, Manuel; Montero-Alonso, Marta; Gómez, María Dolores; Piñana, José Luis; SeqCOVID-SPAIN consortium; González-Candelas, Fernando; Comas, Iñaki; Marina, Alberto; Geller, Ron; Coscolla, Mireia (2021). Evolutionary and phenotypic characterization of two spike mutations in European Lineage 20E of SARS-CoV-2. MBio, 12(6), pp. e2315 - e2321 . https://doi.org/10.1128/mBio.02315-21 . ISSN: 2161-2129
Pérez Lago, L.; Aldamiz Echevarria, T.; Garcia Martinez, R.; Pérez Latorre, L.; Herranz, M.; Sola Campoy, P.; Suarez Gonzalez, J.; Martinez Laperche, C.; Comas, I.; Gonzalez Candelas, F.; Catalán, P.; Muñoz, P.; Garcia de Viedma, D. (2021). Different within-host viral evolution dynamics in three severely immunosuppressed cases with persistent SARS-CoV-2. Biomedicines, 9(7), p. 808 . https://doi.org/10.3390/biomedicines9070808 . ISSN: 2227-9059
Hodcroft, Emma B.; Zuber, Monica; Nadeau, Sarah; Crawford, Katharine H.D.; Bloom, Jesse D.; Veesler, David; Vaughan, Timothy G.; Comas, Iñaki; González-Candelas, Fernando; SeqCOVID-Spain consortium; Stadler, Tanja; Neher, Richard A (2021). Emergence and spread of a SARS-CoV-2 variant through Europe in the summer of 2020. Nature, 595, pp. 707 - 712 . https://doi.org/10.1038/s41586-021-03677-y . ISSN: 0028-0836
Francés-Cuesta, C.; Sánchez-Hellín, V.; Gomila, B.; González-Candelas, F. (2021). Is there a widespread clone of Serratia marcescens causing outbreaks worldwide?. Journal of Hospital Infection, 108, pp. 7 - 14 . https://doi.org/10.1016/j.jhin.2020.10.029 . ISSN: 0195-6701
Valiente-Mullor, C.; Beamud, B.; Ansari, I.; Francés-Cuesta, C.; García-González, N.; Mejía, L.; Ruiz-Hueso, P.; González-Candelas, F. (2021). One is not enough: on the effects of reference genome for the mapping and subsequent analyses of short-reads. Plos Computational Biology, 17(1), p. e1008678 . https://doi.org/10.1371/journal.pcbi.1008678 . ISSN: 1553-734X
Van Rie, A.; García de Viedma, D.; Meehan, C.; Comas, I.; Heupink, T.H.; De Vos, E.; Arrazola de Oñate, W.; Mathys, V.; Ceyssens, P.-J.; Groenen, G.; González-Candelas, F.; Forier, A.; Juengst, E. (2021). Realtime whole genome sequencing for TB source investigation: principles for ethical precision public health. International Journal of Tuberculosis and Lung Disease . ISSN: 1027-3719
Guardiola-Avila, I.; Sánchez-Busó, L.; Acedo-Félix, E.; Zúñiga-Cabrera, M.; Gomez-Gil, B.; González-Candelas, F.; Noriega-Orozco, L. (2021). Core and accessory genome analysis of Vibrio mimicus. Microorganisms, 9(1), p. 191 . https://doi.org/10.3390/microorganisms9010191 . ISSN: 2076-2607
López, Mariana G.; Chiner-Oms, Álvaro; García de Viedma, Darío; Ruiz-Rodriguez, Paula; Bracho, Maria Alma; Cancino-Muñoz, Irving; D'Auria, Giuseppe; de Marco, Griselda; González-Candelas*, Fernando; Comas*, Iñaki; et al. (2021). The first wave of the COVID-19 epidemic in Spain was associated with early introductions and fast spread of a dominating genetic variant. Nature Genetics, 153, pp. 1405 - 1404 . https://doi.org/10.1038/s41588-021-00936-6 . ISSN: 1061-4036
González-Candelas, F.; Shaw, M.-A.; Phan, T.; Kulkarni-Kale, U.; Paraskevis, D.; Luciani, F.; Kimura, H.; Sironi, M. (2021). One year into the pandemic: short-term evolution of SARS-CoV-2 and emergence of new lineages. Infection Genetics And Evolution, 92, p. 104869 . ISSN: 1567-1348
Pérez-Lago, Laura; Sola Campoy, Pedro J.; Buenestado-Serrano, Sergio; Catalán, Pilar; Estévez, Agustín; de la Cueva, Víctor Manuel; Herranz, Marta; Suárez-González, Julia; Alcalá, Luis; Comas, Iñaki; González Candelas, Fernando; Muñoz, Patricia; García de Viedma, Darío; on behalf of Gregorio Marañón Microbiology-ID COVID-19 Study Group (2021). Epidemiological and genomic snapshot of the first 100 B.1.1.7 SARS-CoV-2 cases in Madrid. Journal of Travel Medicine, 28(4), p. taab044 . ISSN: 1195-1982
Carmona-Salido, H.; Fouz, B.; Sanjuán, E.; Carda Diéguez, M.; Delannoy, C.; García-González, N.; González-Candelas, F.; Amaro, C. (2021). Draft genomes sequences of Vibrio vulnificus recovered from moribund tilapia (Oreochromis niloticus). Microbiology Resource Announcements, 10(22), p. e0009421 . https://doi.org/10.1128/MRA.00094-21 . ISSN: 2576-098X
Pérez Lago, L.; Martínez Lozano, H.; Pajares Díaz, J.A.; Díaz Gómez, A.; Machado, M.; Sola Campoy, P.; Herranz, M.; Valerio, Maricela; O., María; Andrés Zayas, C.; Comas, I.; González Candelas, F.; Bañares, R.; Catalán, P.; Muñoz, P.; García de Viedma, D. (2021). Proper assignation of reactivation in a COVID-19 recurrence initially interpreted as reinfection. Journal of Infectious Diseases, 224(5), pp. 788 - 792 . https://doi.org/10.1093/infdis/jiab302 . ISSN: 0022-1899
Pérez Lago, L.; Martínez Lozano, H.; Pajares Díaz, J.A.; Díaz Gómez, A.; Machado, M.; Sola Campoy, P.; Herranz, M.; Valerio, M.; Olmedo, M.; Andrés Zayas, C.; Quesada Cubo, V.; Gómez Ruiz, M.M.; López Fresneda, N.; Sánchez Arcilla, I.; Comas, I.; González Candelas, F.; García de San José, S.; Bañares, R.; Catalán, P.; Muñoz, P.; García de Viedma, D. (2021). Overlapping of independent SARS-CoV-2 nosocomial transmissions in a complex outbreak. Msphere, 6(4), p. 389 . ISSN: 2379-5042
Alatorre-García, T.A.; Fonseca-Coronado, S.; González-Candelas, F. (2021). Homologous recombination as a mechanism of genetic changes in bovine parainfluenza-3 virus. Veterinary Microbiology, 261, p. 10 . https://doi.org/10.1016/j.vetmic.2021.109185 . ISSN: 0378-1135
Pérez Lago, L.; Pérez Latorre, L.; Herranz, Marta; Tejerina, F.; Sola-Campoy, P. J.; Sicilia, J.; Suárez-González, J.; Andrés-Zayas, C.; Chiner-Oms, A.; Jiménez-Serrano, S.; García-González, N.; Comas, I.; González Candelas, F.; Martínez-Laperche, C.; Catalán, P.; Muñoz, P.; García de Viedma, D. (2021). A complete analysis of the epidemiological scenario around a SARS-CoV-2 reinfection: previous infection events and subsequent transmission. Msphere, 6, p. e00596-21 . https://doi.org/10.1128/mSphere.00596-21 . ISSN: 2379-5042
Costa, R.; Bueno, F.; Giménez, E.; Bracho, M.A.; Albert, E.; Carretero, D.; Michelena, P.; Martínez-Costa, C.; González-Candelas, F.: Navarro, D. (2021). Initial viral load and decay kinetics of SARS-CoV-2 lineage B.1.1.7 in the upper respiratory tract of adults and children. Journal of Infection, 83(4), pp. 515 - 518 . https://doi.org/10.1016/j.jinf.2021.08.015 . ISSN: 0163-4453
González-Candelas,F. (2021). Mutaciones, variantes y linajes del SARS-CoV-2. Virología, 24, pp. 49 - 56 . ISSN: 1133-0384
González-Candelas,F. (2021). Genética y evolución en la pandemia de COVID-19. AmbioCiencias: Revista de Divulgación Científica e Innovación Docente, 19, pp. 63 - 72 . ISSN: 2174-8942
Giménez, Estela; Albert, Eliseo; Zulaica, Joao; Torres, Ignacio; Rusu, Luciana; Moreno, Alicia Rodríguez; Burgos, Javier S; Peiró, Salvador; Salas, Dolores; Vanaclocha, Hermelinda; Limón, Ramón; Alcaraz, María Jesús; Sánchez-Payá, José; Díez-Domingo, Javier; Comas, Iñaki; González-Candelas, Fernando; Geller, Ron; Navarro, David; {Valencian Vaccine Research Program (ProVaVac) Study Group (2021). Severe Acute Respiratory Syndrome Coronavirus 2 Adaptive Immunity in Nursing Home Residents Following a Third Dose of the Comirnaty Coronavirus Disease 2019 Vaccine. Clinical Infectious Diseases, 75(1), pp. e865 - e868 . https://doi.org/10.1093/cid/ciac223 . ISSN: 1058-4838
Alm, Erik; Broberg, Eeva K.; Connor, Thomas; Hodcroft, Emma; Komissarov, Andrey B.; Maurer-Stroh, Sebastian; Melidou, Angeliki; Neher, Richard; O'Toole, Áine; Pereyaslov, Dmitriy; Niko Beerenwinkel, Susana Posada-Céspedes, Kim Philipp; Jablonski, Pedro Falé Ferreira, Ivan Topolsky, ..., Norbert Nowotny, Osama Abdul-Wahab, Fernando Gonzalez- Candelas, Martin H Andersen, Sarah Taylor (2020). Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020. Eurosurveillance, 25(32), pp. 1 - 8 . Institutional Repository . ISSN: 1560-7917
Comas,I.; Cancino-Muñoz,I.; Mariner-Llicer,C.; Goig,G.A.; Ruiz-Hueso,P.; Francés-Cuesta,C.; García-González,N.; González-Candelas,F. (2020). Uso de las tecnologías de secuenciación masiva para el diagnóstico y epidemiología de enfermedades infecciosas. Enfermedades Infecciosas y Microbiología Clínica, 38(Suppl. 1), pp. 32 - 38 . ISSN: 0213-005X
Pérez-Losada,M.; Arenas,M.; Galán,J.C.; Bracho,M.A; Hillung,J.; García-González,N.; González-Candelas,F. (2020). High-Throughput Sequencing (HTS) for the analysis of viral populations. Infection Genetics And Evolution, 80, p. 1042088 . https://doi.org/10.1016/j.meegid.2020.104208 . ISSN: 1567-1348
Sironi, M.; Hasnain, S.E.; Phan, T.; Luciani, F.; Shaw, M.-A.; Sallum, M.A.; Ezzaty Mirhashemi, M.; Morand, S.; González-Candelas, F. (2020). SARS-CoV-2 and COVID-19: A Genetic, Epidemiological, and Evolutionary Perspective. Infection Genetics And Evolution, 84, p. 104384 . https://doi.org/10.1016/j.meegid.2020.104384 . ISSN: 1567-1348
Beale, M.A.; Noguera-Julian, M.; Godornes, C.; Casadellà, M.; González-Beiras, C.; Parera, M.; Corbacho-Monne, M.; Paredes, R.; Gonzalez-Candelas, F.; Marks, M.; Lukehart, S.; Thomson, N.R.; Mitjà, O. (2020). Yaws re-emergence and bacterial drug resistance selection after mass administration of azithromycin: a genomic epidemiology investigation. Lancet Infectious Diseases, 1(6), pp. e263 - e271 . https://doi.org/10.1016/S2666-5247(20)30113-0 . ISSN: 1473-3099
Fuster, B.; Salvador, C.; Tormo, N.; García-González, N.; González-Candelas, F.; Gimeno, C. (2020). Molecular epidemiology and drug-resistance mechanisms in carbapenem-resistant Klebsiella pneumoniae isolated in patients from a tertiary hospital in Valencia, Spain. Journal Of Global Antimicrobial Resistance, 22, pp. 718 - 725 . https://doi.org/10.1016/j.jgar.2020.05.002 . ISSN: 2213-7165
Majander, K.; Pfrengle, S.; Neukamm, J.; Kocher, A.; du Plessis, L.; Pla-Díaz, M.; Arora, N.; Akgül, G.; Salo, K.; Schats, R.; Inskip, S.; Oinonen, M.; Valk, H.; Malve, M.; Kriiska, A.; Onkamo, P.; González-Candelas, F.; Kühnert, D.; Krause, J.; Schuenemann, V.J. (2020). Ancient bacterial genomes reveal a formerly unknown diversity of Treponema pallidum strains in the early modern Europe. Current Biology, 30, pp. 1 - 16 . https://doi.org/10.1016/j.cub.2020.07.058 . ISSN: 0960-9822
Mejía, L.; Medina, J.L.; Bayas, R.; Villavicencio, F.; Zapata, S.; Matheu, J.; Wagenaar, J.A; González-Candelas, F.; Vinueza-Burgos, C. (2020). Genomic epidemiology of Salmonella Infantis in Ecuador: from poultry farms to human infections. Frontiers In Veterinary Science, 7, p. 691 . https://doi.org/10.3389/fvets.2020.547891 . ISSN: 2297-1769
Albert, E.; Bracho, M.A.; Serrano, A.; González-Candelas, F.; Navarro, D. (2020). Assessing the potential association between SARS-CoV-2 RNA load in the respiratory tract and COVID-19 mortality. Journal of Medical Virology . https://doi.org/10.1002/jmv.26644 . ISSN: 0146-6615
Carazo, P.; González-Candelas, F. (2020). COVID19: los sexos y evolución, a la defensiva. Mètode - Revista de la Universitat de València, 106, pp. 88 - 89 . ISSN: 1133-3987
Domingo-Calap, Pilar; Beamud, Beatriz; Vienne, Justine; González-Candelas, Fernando; Sanjuán, Rafael (2020). Isolation of four lytic phages infecting Klebsiella pneumoniae K22 clinical isolates from Spain. International Journal Of Molecular Sciences, 21(2), p. 425 . https://doi.org/10.3390/ijms21020425 . ISSN: 1661-6596
Domingo-Calap, Pilar; Beamud, Beatriz; Mora,L.; González-Candelas, Fernando; Sanjuán, Rafael (2020). Isolation and characterization of two Klebsiella pneumoniae phages encoding divergent depolymerases. International Journal Of Molecular Sciences, 21(9), p. 3160 . ISSN: 1661-6596
González-Candelas, F. (2020). La evolución, herramienta básica para estudiar los virus SARS-CoV-2. eVOLUCIÓN. Revista de la Sociedad Española de Biología Evolutiva., 14(11), pp. 17 - 34
Barragán-Praga,H.; Ruiz-Hueso,P.; Tedim,A.P.; González-Candelas,F.; Galán,J.C.; Cantón,R.; Morosini,M.I. (2019). Emergence and dissemination of colistin-resistant Klebsiella pneumoniae isolates expressing OXA-48 plus CTX-M-15 in patients not previously treated with colistin in a Spanish University hospital. Infection Genetics And Evolution, 93, pp. 147 - 153 . ISSN: 1567-1348
Beamud, Beatriz; Bracho, María Alma; Gonzalez-Candelas, Fernando. (2019). Characterization of new recombinant forms of HIV-1 from the Comunidad Valenciana (Spain) by phylogenetic incongruence. Frontiers In Microbiology, 10, p. 01006 . https://doi.org/10.3389/fmicb.2019.01006 . ISSN: 1664-302X
León-Sampedro, Ricardo; del Campo, Rosa; Rodríguez-Baños, Mercedes; Lanza, Val; Pozuelo, María José; Francés-Cuesta, Carlos; Tedim, Ana P.; Freitas, Ana; Novais, Carla; Peixe, Luísa; Willems, Rob; Corander, Jukka; González-Candelas, Fernando; Baquero, Fernando; Coque, Teresa (2019). Phylogenomics of Enterococcus faecalis from wild birds: New insights into host-associated differences in core and accessory genomes of the species. Environmental Microbiology, 21(8), pp. 3046 - 3062 . https://doi.org/10.1111/1462-2920.14702 . ISSN: 1462-2912
Chiner-Oms, Alvaro; Berney, Michael; Boinett, Christine; Gonzalez-Candelas, Fernando; Young, Douglas; Gagneux, Sebastien; Jacobs, William; Parkhill, Julian; Cortes, Teresa; Comas, Iñaki (2019). Genome-wide mutational biases fuel transcriptional diversity in the Mycobacterium tuberculosis complex. Nature Communications, 10(1), p. 3994 . https://doi.org/10.1038/s41467-019-11948-6 . ISSN: 2041-1723
Francés-Cuesta, Carlos; de la Caba, Idoia; Idigoras, Pedro; Fernández-Rodríguez, Amparo; del Valle Pérez, David; Marimón, Jose MarÍa; González-Candelas, Fernando (2019). Whole-genome sequencing of Neisseria gonorrhoeae in a forensic transmission case. Forensic Science International-Genetics, 42, pp. 141 - 146 . ISSN: 1872-4973
Chiner-Oms, Álvaro; Sánchez-Busó, Leonor; Corander, Jukka; Gagneux, Sebastien; Harris, Simon; Young, Douglas; González-Candelas, Fernando; Comas, Iñaki (2019). Genomic determinants of sympatric speciation of the Mycobacterium tuberculosis complex across evolutionary timescales. Science Advances, 5(6), p. eaaw2207 . https://doi.org/10.1126/sciadv.aaw3307 . ISSN: 2375-2548
Francés-Cuesta, Carlos; de la Caba, Idoia; Idigoras, Pedro; Fernández-Rodríguez, Amparo; del Valle Pérez, David; Marimón, Jose MarÍa; González-Candelas, Fernando (2019). Molecular evolution and complete genome sequences in forensic analysis: Neisseria gonorrhoeae in a transmission case. Forensic Science International-Genetics, 7, p. 432 . https://doi.org/10.1016/j.fsigss.2019.10.040 . ISSN: 1872-4973
González-Candelas,F.; Francés-Cuesta,C.; García-González,N. (2019). The power and limitations of genomic surveillance of bacteria. Future Microbiology, 14(16), p. 0259 . https://doi.org/10.2217/fmb-2019-0259 . ISSN: 1746-0913
Gambato, Martina; Gregori, Josep; Quer, Josep; Koutsoudakis, George; González, Patricia; Caro-Pérez, Noelia; García-Cehic, Damir; García-González, Neris; González-Candelas, Fernando; Esteban, Juan I.; Crespo, Gonzalo; Navasa, Miquel; Forns, Xavier; Pérez-del-Pulgar, Sofía (2019). Hepatitis C virus intrinsic molecular determinants may contribute to the development of cholestatic hepatitis after transplantation. Journal of General Virology, 100, pp. 63 - 68 . https://doi.org/10.1099/jgv.0.001175 . ISSN: 0022-1317
Domingo-Calap,P.; Schubert,B.; Joly,M.; Solis,M.; Untrau,M.; Muller,C.; Le Gentil,M.; Michel,S.; Carapito,R.; Georgel,P.; Caillard,S.; Fafi-Kremer,S.; Kohlbacher,O.; Paul,N.; González-Candelas,F.; Bahram,S. (2018). An unusually high substitution rate for transplant-associated BK polyomavirus in vivo is further concentrated in HLA-C-bound viral peptides. PLOS Pathogens, 14(10), p. e1007368 . Publicacion online (https://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1007368) . ISSN: 1553-7366
Álvaro Chiner-Oms; Fernando González-Candelas, Iñaki Comas (2018). Gene expression models based on a reference laboratory strain are poor predictors of Mycobacterium tuberculosis complex transcriptional diversity. Scientific Reports, 8, p. 3813 . https://doi.org/10.1038/s41598-018-22237-5 . ISSN: 2045-2322
Strouhal,M.; Oppelt,J.; Mikalová,L.; Arora,N.; Nieselt,K.; González-Candelas,F.; Smajs,D. (2018). Reanalysis of Chinese Treponema pallidum samples: all Chinese samples cluster with SS14-like group of syphilis-causing treponemes. BMC Research Notes, 16, p. 11 . https://doi.org/10.1186/s13104-017-3106-7 . ISSN: 1756-0500
Patiño-Galindo, J.A.; González-Candelas, F., Pybus, O. (2018). The effect of RNA substitution models on viroid and RNA virus phylogenies. Genome Biology And Evolution, 10(2), pp. 657 - 666 . https://doi.org/10.1093/gbe/evx273 . ISSN: 1759-6653
Roig,F.J; González-Candelas,F.; Sanjuán,E.; Feil,E.J.; Fouz,B.; Llorens,C.; Baker-Austin,C.; Oliver,J.D.; Danin-Poleg,Y.; Gibas,C.J.; Kashi,Y.; Gulig,P.A.; Morrison,S.S.; Amaro,C. (2018). Phylogeny of Vibrio vulnificus from the analysis of the core-genome: implications for intra-species taxonomy. Frontiers In Microbiology, 8, p. 2613 . Institutional Repository . ISSN: 1664-302X
Ramírez Soto,M.C.; Bracho,M.A.; González-Candelas,F.; Huichi-Atamaric,M. (2018). Genotypes and subgenotypes of hepatitis B virus circulating in an endemic area in Peru. Archives of Virology, 163(1), pp. 183 - 189 . https://doi.org/10.1007/s00705-017-3557-0 . ISSN: 0304-8608
Patiño-Galindo, Juan; González-Candelas, Fernando (2018). Molecular evolution methods to study HIV-1 epidemics. Future Virology, 13(6), pp. 399 - 404 . ISSN: 1746-0794
Grillová, Linda; Bawa, Tanika; Mikalová, Lenka; Gayet-Ageron, Angèle; Nieselt, Kay; Strouhal, Michal; Sednaoui, Patrice; Ferry, Tristan; Cavassini, Matthias; Lautenschlager, Stephan; Dutly, Fabrizio; Plá-Díaz, Marta; Krützen, Michael; González-Candelas, Fernando; Bagheri, Homayoun; ¿majs, David; Arora, Natasha; Bosshard, Philipp P. (2018). Molecular characterization of Treponema pallidum subsp. pallidum in Switzerland and France with a new Multilocus Sequence Typing scheme. Plos One, 13(7), p. e0200773 . ISSN: 1932-6203
González-Candelas, Fernando; Bracho, Mª Alma; Hillung, Julia; Chiner, Alvaro; Ruiz-Hueso, Paula; Francés-Cuesta, Carlos; Mejía, Mª Lorena; Beamud, Beatriz; Pla-Díaz, Marta; García-González, Neris (2018). Epidemiología molecular de microorganismos patógenos: entre la evolución y la clínica. SEM@foro (Madrid), 65, pp. 31 - 32 . ISSN: 2254-4399
Patiño-Galindo,J.A.; Domínguez,F.; Cuevas,M.; Delgado,E.; Sánchez,M.; Pérez-Álvarez,L.; Thomson,M.M.; Sanjuán,R.; González-Candelas,F.; Cuevas,.J.M. (2018). Genome-scale analysis of evolutionary rate and selection in a fast-expanding Spanish cluster of HIV-1 subtype F. Infection Genetics And Evolution, 66, pp. 43 - 47 . Institutional Repository . ISSN: 1567-1348
Perpiñán,E.; Caro-Pérez,N.; García-González,N.; Gregori,J.; González,P.; Bartres,C.; Soria,M.E.; Perales,C.; Lens,S.; Mariño,Z.; Londoño,M.C.; Ariza,X.; Koutsoudakis,G.; Quer,J.; González-Candelas,F.; Forns,X.; Pérez-del-Pulgar,S. (2018). Hepatitis C virus early kinetics and resistance-associated substitution dynamics during antiviral therapy with direct-acting antivirals. Journal of Viral Hepatitis, 25(12), pp. 1515 - 1525 . https://doi.org/10.1111/jvh.12986 . ISSN: 1352-0504
Patiño-Galindo,J.A.; González-Candelas,F. (2017). The substitution rate of HIV-1 subtypes: a genomic approach. Virus Evolution, 3(2), p. vex029 . Institutional Repository . ISSN: 2057-1577
Patiño-Galindo, JÁ; Torres-Puente, M; Bracho, MA; Alastrué, I; Juan, A; Navarro, D; Galindo, MJ; Ocete, D; Ortega, E; Gimeno, C; Belda, J; Dominguez, V; Moreno, R; Gonzalez-Candelas, F (2017). The molecular epidemiology of HIV-1 in the Comunidad Valenciana (Spain): analysis of transmission clusters. Scientific Reports, 7(11584), pp. 1 - 10 . Institutional Repository . ISSN: 2045-2322
Arora, Natasha; Schuenemann, Verena J.; Jäger, Günter; Peltzer, Alexander; Seitz, Alexander; Herbig, Alexander; Strouhal, Michal; Grillová, Linda; Sánchez-Busó, Leonor; Kühnert, Denise; Bos, Kirsten I.; Juricevic, Nada; Rivero Davis, Leyla; Mikalová, Lenka; Bruisten, Sylvia; Komericki, Peter; French, Patrick; Grant, Paul; Pando, María A.; Gallo Vaulet, Lucía; Rodríguez Fermepin, Marcelo; Martinez, Antonio; Centurion Lara, Arturo; Giacani, Lorenzo; Norris, Steven J.; ¿majs, David; Bosshard, Philipp P.; González-Candelas, Fernando; Nieselt, Kay; Krause, Johannes; Bagheri, Homayoun C. (2017). Origin of modern syphilis and emergence of a pandemic Treponema pallidum cluster. Nature Microbiology, 2, p. 16245 . Institutional Repository . ISSN: 2058-5276
Patiño-Galindo, J.A.; González-Candelas, F (2017). Comparative analysis of variation and selection in the HCV genome. Infection Genetics And Evolution, 49, pp. 104 - 110 . Institutional Repository . ISSN: 1567-1348
Patiño-Galindo, Juan Ángel; Torres-Puente, Manoli; Bracho, María A.; Alastrué, Ignacio; Juan, Amparo; Navarro, David; Galindo, María José; Gimeno, Concepción; Ortega, Enrique; González-Candelas, Fernando (2017). Identification of a large, fast-expanding HIV-1 subtype B transmission cluster among MSM in Valencia, Spain. Plos One, 12(2), p. e0171062 . Institutional Repository . ISSN: 1932-6203
Caro-Pérez,N.; Martínez-Rebollar,M.; Gregori,J.; Quer,J.; González,P.; Gambato,M.; García-González,N.; González-Candelas,F.; Costa,J.; Mallolas,J.; Forns,X.; Laguno,M.; Pérez-del-Pulgar,S. (2017). Phylogenetic analysis of an epidemic outbreak of acute hepatitis C in HIV-infected patients by ultra-deep pyrosequencing. Journal of Clinical Virology, 92, pp. 42 - 47 . Institutional Repository . ISSN: 1386-6532
Vinuesa V; Bracho MA; Albert E; Solano C; Torres-Puente M; Gimenez E; Gonzalez Candelas F; Navarro D (2017). The impact of virus population diversity on the dynamics of cytomegalovirus DNAemia in allogeneic stem cell transplant recipients. Journal of Virology, 98(10), pp. 2530 - 2542 . https://doi.org/10.1099/jgv.0.000916 . ISSN: 0022-538X
González-Candelas, F; García-González, N; Bracho, MA (2017). A molecular population genetics approach for the identification and forensic assignment of viral transmission groups. Journal of Integrated OMICS, 7(2), p. 12 . ISSN: 2182-0287
Patiño-Galindo,J.A. ;Salvatierra,K.; González-Candelas,F.; López-Labrador, F.X. (2016). Comprehensive screening for naturally-occurring Hepatitis C virus resistance to direct-acting antivirals in the NS3, NS5A and NS5B genes in worldwide isolates from viral genotypes 1-6. Antimicrobial Agents and Chemotherapy, 60(4), pp. 2402 - 2416 . Institutional Repository . ISSN: 0066-4804
Pujol, J.; Godoy, P.; Soldevila, N.; Castilla, J.; González-Candelas, F.; Mayoral, J.M.; Astray, J.; Garcia, S.; Martin, V.; Tamames, S.; Delgado, M.; Domínguez, A.; CIBERESP Cases and Controls in Pandemic Influenza Working Group. (2016). Social class based on occupation is associated with hospitalization for A(H1N1)pdm09 infection. Comparison between hospitalized and ambulatory cases. Epidemiology and Infection, 144(4), pp. 732 - 740 . https://doi.org/10.1017/S0950268815001892 . ISSN: 0950-2688
Álvarez, M.; Luis-Hidalgo, M.; Bracho, M.A.; Blanquer, A.; Larrea, L.; Villalba, J.; Puig, N.; Planelles, D.; Montoro, J.; González-Candelas, F.; Roig, R. (2016). Transmission of human immunodeficiency virus type-1 by fresh frozen plasma treated with methylene blue and light. Transfusion, 56, pp. 831 - 836 . ISSN: 0041-1132
Martín, V.; Dávila-Batista, V.; Castilla, J.; Godoy, P.; Delgado-Rodríguez, M.; Soldevila, N.; Molina, A.; Fernández-Villa, T.; Astray, J.; Castro, A.; González-Candelas, F.; Mayoral, J.M.; Quintana, J.M.; Domínguez, Á.; the CIBERESP Cases and Controls in Pandemic Influenza Working Group, Spain. (2016). Comparison of body mass index (BMI) with the CUN-BAE body adiposity estimator in the prediction of hypertension and type 2 diabetes. BMC Public Health, 16, p. 82 . Institutional Repository . ISSN: 1471-2458
Patiño-Galindo, J.;Thomson, M.M.; Pérez-Álvarez, L.; Delgado, E.; Cuevas, M.T.; Fernández-García, A.; Nájera, R.; Iribarren, J.A.; Cilla, G.; López-Soria, L.; Lezaun, M.J.; Cisterna, R.; González-Candelas, F.; (2016). Transmission dynamics of HIV-1 subtype B in the Basque Country, Spain. Infection Genetics And Evolution, 40, pp. 91 - 97 . Institutional Repository . ISSN: 1567-1348
Godoy, Pere; Castilla, Jesús; Mayoral, José María; Delgado-Rodríguez, Miguel; Martín, Vicente; Astray, Jenaro; Soldevila, Núria; González-Candelas, Fernando; Castro, Ady; Baricot, Maretva; Tamames, Sonia; Alonso, Jordi; Cantón, Rafael; Quintana, José María; Pumarola, Tomás; Domínguez, Angela; and the CIBERESP Cases and Controls in Pandemic Influenza Working Group, Spain (2016). Smoking may increase the risk of hospitalization due to influenza. European Journal of Public Health . https://doi.org/10.1093/eurpub/ckw036 . ISSN: 1101-1262
Morales Suárez-Varela, Maria; Llopis-González, Agustín; González-Candelas, Fernando; Astray, Jenaro; Alonso, Jordi; Garin, Olatz; Castro, Ady; Galán, Juan Carlos; Soldevila, Nuria; Castilla, Jesús; Godoy, Pere; Delgado-Rodríguez, Miguel; Martín, Vicente; Mayoral, Jose María; Pumarola, Tomas; Quintana, José Maria; Tamames, Sonia; Rubio-López, Nuria; Dominguez, Àngela (2016). Economic evaluation of health services costs during pandemic influenza A (H1N1) pdm09 infection in pregnant and non-pregnant women in Spain (2009). Iranian Journal Of Public Health, 45(4), pp. 423 - 434 . Institutional Repository . ISSN: 2251-6085
Pujol, Jesús; Godoy, Pere; Soldevila, Núria; Castilla, Jesús; González-Candelas, Fernando; Mayoral, José María; Astray, Jenaro; García, Susana; Martín, Vicente; Tamames, Sonia; Delgado, Miguel; Domínguez, Àngela; the CIBERESP Cases and Controls in Pandemic Influenza Working Group (2016). Effect of occupational exposure on A(H1N1)pdm09 infection and hospitalization. Annals of Occupational Hygiene, 60(8), pp. 1009 - 1019 . https://doi.org/10.1093/annhyg/mew044 . ISSN: 0003-4878
Chiner-Oms, Alvaro; González Candelas, Fernando (2016). EvalMSA, a Program to Evaluate Multiple Sequence Alignments and Detect Outliers. Evolutionary Bioinformatics, 12, pp. 277 - 284 . Institutional Repository . ISSN: 1176-9343
Martín, Vicente; Castilla, Jesús; Godoy, Pere; Delgado-Rodríguez, Miguel; Soldevila, Nuria; Tamames, Fernández-Villa, Tania; Molina, Antonio J.; Astray, Jenaro; Castro, Ady; González-Candelas, Fernando; Mayoral, José María; Quintana, José María; Domínguez, Angela; and the CIBERESP Cases and Controls in Pandemic Influenza Working Group, Spain (2016). High body mass index as a risk factor for hospitalization due to influenza: a case-control study. Archivos de Bronconeumologia, 52(6), pp. 299 - 307 . ISSN: 0300-2896
Sánchez-Busó, L.; Guiral, S.; Crespi, S.; Moya, V.; Camaró, M.L.; Olmos, M.P.; Adrián, F.; Morera, V.; González Morán, F.; Vanaclocha, H.; González-Candelas, F. (2016). Genomic investigation of a legionellosis outbreak in a persistently colonized hotel. Frontiers In Microbiology, 6, p. 1556 . Institutional Repository . ISSN: 1664-302X
Almagro, G.; Viale, A.M.; Montero, M.; Rahimpour, M.; Muñoz, F.J.; Baroja-Fernández, E.; Bahaji, A.; Zúñiga, M.; González-Candelas, F.; Pozueta-Romero, J. (2015). Comparative genomic and phylogenetic analyses of gammaproteobacterial glg genes traced the origin of the Escherichia coli glycogen glgBXCAP operon to the last common ancestor of the sister orders Enterobacteriales and Pasteurellales. Plos One, 10(1), p. e0115516 . ISSN: 1932-6203
Sánchez-Busó, L.; Olmos, M.P.; Camaró, M.L.; Adrián, F.; Calafat, J.M.; González-Candelas, F. (2015). Phylogenetic analysis of environmental Legionella pneumophila isolates from an endemic area (Alcoy, Spain). Infection Genetics And Evolution, 30(1), pp. 45 - 54 . ISSN: 1567-1348
Pérez-Losada, M.; Arenas, M.; Galán, J.C.; Palero, F.; González-Candelas, F. (2015). Recombination in viruses: mechanisms, methods of study, and evolutionary consequences. Infection Genetics And Evolution, 30, pp. 296 - 307 . Institutional Repository . ISSN: 1567-1348
Toledo, Diana; Aerny, Nicole; Soldevila, Núria; Baricot, Maretva; Godoy, Pere; Castilla, Jesús; García-Gutierrez, Susana; Torner, Núria; Astray, Jenaro; Mayoral, Jose María; Tamames, Sonia; González Candelas, Fernando; Martín, Vicente; Díaz, José; Domínguez, Angela (2015). Managing an Online Survey about Influenza Vaccination in Primary Healthcare Workers. International Journal Of Environmental Research And Public Health, 12(1), pp. 541 - 553 . Institutional Repository . ISSN: 1661-7827
Amadoz,A.; González-Candelas, F. (2015). A novel approach to identify candidate prognostic factors for Hepatitis C treatment response integrating clinical and viral genetic data. Evolutionary Bioinformatics, 11, pp. 15 - 24 . ISSN: 1176-9343
González-Candelas,F. (2015). Affaire Maeso: la biologie au coeur de l¿enquête. Recherche, 496, pp. 48 - 52 . ISSN: 0029-5671
Godoy,P.;Castilla,J.;Mayoral,J.M.;Martín,V.;Astray,J.;Torner,N.;Toledo, D.;González-Candelas,F.;García,S.;Diaz-Borregol,J.;Tamames,S.;Domínguez,A.;the Working Group for the Survey on Influenza Vaccination in Primary Health Care Professionals (2015). Influenza vaccination of primary healthcare physicians may be associated with vaccination of their patients: a vaccination coverage study. Bmc Family Practice, 16, p. 44 . ISSN: 1471-2296
Patiño Galindo, J.A.; Torres-Puente, M.; Gimeno, C.; Ortega, E.; Navarro, D.; Galindo, M.J.; Navarro, L.; Navarro, V.; Juan, A.; Belda, J.; Bracho, M. A.; González-Candelas, F.; on behalf of CRIVIH. (2015). Expansion of the CRF19_cpx Variant in Spain. Journal of Clinical Virology, 69, pp. 146 - 149 . ISSN: 1386-6532
Antón, A.; García, S.; Soldevila, N.; González-Candelas, F.; Godoy, P.; Castilla, J.; Mayoral, J.M.; Astray, J.; Martín, V.; Tamames, S.; Toledo, D.; Aguirre, U.; Domínguez, A.; and the CIBERESP Working Group for the Survey on Influenza Vaccination in Primary Health Care Workers. (2015). Visualizing knowledge and attitude factors related to influenza vaccination of physicians. Vaccine, 33(7), pp. 885 - 891 . ISSN: 1358-8745
Sánchez-Busó, L.; Coscollá, M.; Palero, F.; Camaró, M.L.; Gimeno, A.; Moreno, P.; Escribano, I.; López Perezagua, M.M.; Colomina, J.; Vanaclocha, H.; González-Candelas, F. (2015). Geographical and temporal structure of Legionella pneumophila sequence types in Comunitat Valenciana (Spain), 1998-2013. Applied and Environmental Microbiology, 81(20), pp. 7106 - 7113 . ISSN: 0099-2240
155. Garcia-Etxebarria, K.; Bracho, M.A.; Galán, J.C.; Pumarola, T.; Castilla, J.; Ortiz de Lejarazu, R.; Rodriguez-Dominguez, M.; Bonet, N.; Garcia-Garcerà, M.; Domínguez, A.; González-Candelas, F.; Calafell, F., on behalf of the CIBERESP Cases and Controls in Pandemic Influenza Working Group. (2015). No major host genetic risk factor contributed to A(H1N1)2009 influenza severity. Plos One, 10(9), p. E00135983 . ISSN: 1932-6203
Cancino-Muñoz, Irving; Mulet-Bayona, Juan Vicente; Salvador-García, Carme; Tormo-Palop, Nuria; Guna-Serrano, María del Remedio; Gimeno-Cardona, Concepción; González-Candelas, Fernando (2024). Evolution and Global Dispersal of Fluconazole-Resistant Candida auris.Evolution and Global Dispersal of Fluconazole-Resistant Candida auris. MBio, 16(2), p. e3164-24 . https://doi.org/10.1128/mbio.03164-24 . ISSN: 2161-2129
Pla-Díaz, Marta; Akgül, Gülfirde; Molak, Martyna; du Plessis, Louis; Panagiotopoulou, Hanna; Doan, Karolina; Bogdanowicz, Wiesław; Dąbrowski, Paweł; Oziębłowski, Maciej; Kwiatkowska, Barbara; Szczurowski, Jacek; Grzelak, Joanna; Arora, Natasha; Majander, Kerttu; González-Candelas, Fernando; Schuenemann, Verena J. (2025). Insights into Treponema pallidum genomics from modern and ancient genomes using a novel mapping strategy. Bmc Biology, 23, p. 7 . https://doi.org/10.1186/s12915-024-02108-4 . ISSN: 1741-7007
Álvarez-Herrera, Miguel; Ruiz-Rodriguez, Paula; Navarro-Domínguez, Beatriz; Zulaica, Joao; Grau, Brayan; Bracho, María Alma; Guerreiro, Manuel; Aguilar‐Gallardo, Cristóbal; González-Candelas, Fernando; Comas, Iñaki; Geller, Ron; Coscollá, Mireia (2025). Genome data artifacts and functional studies of deletion repair in the BA.1 SARS-CoV-2 spike protein. Virus Evolution, 11(1), p. veaf015 . https://doi.org/10.1093/ve/veaf015 . ISSN: 2057-1577
García-González, Neris; Beamud, Beatriz; Sevilla-Fortuny, Jordi; Sánchez-Hellín, Victoria; Vidal, Inmaculada; Rodriguez, Juan Carlos; Fuster, Begoña; Tormo, Nuria; Salvador, Carme; Gimeno, Concepción; Gomila-Sard, Bárbara; Giner Almaraz, Salvador; Martínez, Olalla; Colomina, Javier; Navarro, David; Domínguez, Victoria; González-Candelas, Fernando (2025). Genomic surveillance reveals different transmission patterns between third-generation cephalosporin and carbapenem resistance in Klebsiella pneumoniae in the Comunidad Valenciana (Spain), 2018-2020. Antimicrobial Resistance And Infection Control, 14, p. 44 . https://doi.org/10.1186/s13756-025-01553-2 . ISSN: 2047-2994
Carbó-Ramírez, Sandra; Codoñer-Alejos, Alan; Reyes-Prieto, Mariana; Bernat, Cristina; Gil, Anabel; Ruiz-Ramírez, Jorge; Soriano-Chirona, Vicent; De Marco-Romero, Griselda; Gonzalez-Candelas, Fernando; Martinez-Priego, Llúcia (2025). One sample, three genotypes: a flanking region deletion at the D19S433 locus causes genotyping discrepancies between CE and NGS technologies. Forensic Science International-Genetics, 78, p. 103301 . https://doi.org/10.1016/j.fsigen.2025.103301 . ISSN: 1872-4973

Thesis, minor thesis and research reports

Neris García González . (2023) . Genomic epidemiology and antimicrobial resistance of Klebsiella pneumoniae in the Comunidad Valenciana (Doctoral Thesis with International Mention) . Universitat de València-Estudi General. https://roderic.uv.es/handle/10550/88748
Beatriz Beamud Aranguren . (2023) . The effect of the genetic background on phage infectivity in an encapsulated host (Doctoral Thesis) . Universitat de València-Estudi General. https://roderic.uv.es/handle/10550/88740
Francisco Javier Valls Monzó . (2023) . Reconstrucción del core genome ancestral de los ST11 y ST307 de Klebsiella pneumoniae para el análisis de datos NGS (Working Master or third cycle over 12 credits) . Universitat de València-Estudi General.
Jordi Sevilla Fortuny . (2023) . Predicción genómica de resistencia a antibióticos en Klebsiella pneumoniae (Final Degree work) . Universitat de València-Estudi General.
Pedro Alba Hernández . (2023) . Desarrollo de un pipeline bioinformático para análisis metagenómico de muestras respiratorias (Final Degree work) . Universitat de València-Estudi General.
Agustin Mayans Moncho . (2023) . Transferencia genética horizontal entre dominios (Final Degree work) . Universitat de València-Estudi General.
Lorena López Roig . (2023) . Origen y evolución de las halocinas (Final Degree work) . Universitat de València-Estudi General.
Mejía Castañeda, Lorena . (2022) . Epidemiología genómica: de la transmisión a la evolución de microorganismos patógenos (Doctoral Thesis) . Universidad de Valencia.
Miguel Mayor Tortosa . (2022) . Epidemiology and pathogenesis of human Coronaviruses (Final Degree work) . Universitat de València-Estudi General.
Paula Mompó Gisbert . (2022) . Búsqueda de actividad lisógena en bacteriófagos de interés terapéutico (Final Degree work) . Universitat de València-Estudi General.